View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_low_9 (Length: 284)
Name: NF16474_low_9
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_9 |
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| [»] scaffold1192 (1 HSPs) |
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| [»] scaffold1390 (1 HSPs) |
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| [»] scaffold0778 (2 HSPs) |
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Alignment Details
Target: scaffold1192 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold1192
Description:
Target: scaffold1192; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 52 - 267
Target Start/End: Original strand, 1475 - 1690
Alignment:
| Q |
52 |
ataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatg |
151 |
Q |
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| T |
1475 |
ataaatcatatgccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatg |
1574 |
T |
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| Q |
152 |
ttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttac |
251 |
Q |
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| T |
1575 |
ttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttac |
1674 |
T |
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| Q |
252 |
aatctcagtatataat |
267 |
Q |
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|||||||||||||||| |
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| T |
1675 |
aatctcagtatataat |
1690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25907057 - 25906830
Alignment:
| Q |
18 |
agctggccactagatctcgctgaaaaacacaacaataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaacta |
117 |
Q |
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| T |
25907057 |
agctggccactagatctcgctgaaaaacacaacaataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaacta |
25906958 |
T |
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| Q |
118 |
ctttattcgtaacaaatctaaaagtactgatatgttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatt |
217 |
Q |
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| T |
25906957 |
ctcta---------------------ctaatatgttttcaccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatt |
25906879 |
T |
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| Q |
218 |
taattaccccaagaaacaaaacttatcgagttacaatctcagtatataa |
266 |
Q |
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| T |
25906878 |
taattaccacaagaaacaaaacttattgagttacaatctcagtatataa |
25906830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 25911462 - 25911265
Alignment:
| Q |
52 |
ataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatg |
151 |
Q |
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| T |
25911462 |
ataaatcatatgccgattattctatcatcaaacaatacctaataaacgatgtagtgtggaaaactactctattcataacaaatctaaaag------tatg |
25911369 |
T |
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| Q |
152 |
ttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttac |
251 |
Q |
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| T |
25911368 |
ttttcaacgttcctaac------aaacaaactcaaataaaataaacataattgcttatcttgtatttaattaccacaagaaacaaaacttagcgagtaat |
25911275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 25892979 - 25892783
Alignment:
| Q |
52 |
ataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatg |
151 |
Q |
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||||||||||| |||||||||| | ||||||| | ||| |||||| ||||||| || | ||||||| ||||||||||||||||||||||| || |
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| T |
25892979 |
ataaatcatatgccgattattcaaacatcaaacattactaaataaacgatgtaga-tggacaactactctattcgtaacaaatctaaaagta------tg |
25892887 |
T |
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| Q |
152 |
ttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttac |
251 |
Q |
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| T |
25892886 |
ttttcaacgttcctaaca------aacacattcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaat |
25892793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1390 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1390
Description:
Target: scaffold1390; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 1073 - 1164
Alignment:
| Q |
52 |
ataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagta |
143 |
Q |
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| T |
1073 |
ataaatcatatgccgattattctaacatcaaacaatacctaataaacgatgtagtgtggaaaactactctattcgtaacaaaactaaaagta |
1164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0778
Description:
Target: scaffold0778; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 756 - 685
Alignment:
| Q |
177 |
acacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagt |
248 |
Q |
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| T |
756 |
acacactcaaataagataaacatcattgcttatcttgtatttaattaccacaagaaacaaaacttatcgagt |
685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 1030 - 963
Alignment:
| Q |
52 |
ataaatcatataccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactact |
119 |
Q |
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| T |
1030 |
ataaatcatatgccgattattccaacatcaaaccatacctaataaacgatgtagtgtggaaaactact |
963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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