View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16475_high_1 (Length: 707)
Name: NF16475_high_1
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 51406459 - 51407002
Alignment:
| Q |
1 |
ctcttttgttaccttctccggccatatcctgttgaaaa-ttatgatgttgttgatgcacaccaacatctcatatttgtaagggattaaattgcggtattt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406459 |
ctcttttgttaccttctccggccatatcctgttgaaaaattatgatgttgttgatgcacaccaacatctcatatttgtaagggattaaattgcggtattt |
51406558 |
T |
|
| Q |
100 |
aactgttccatgcgttctgctttcatggttctcatttttggcctcccaattcgtgcacttagaaagaaatgaagttttttgtgtctaccactaaatgcag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406559 |
aactgttccatgcgttctgctttcatggttctcatttttggcctcccaattcgtgcacttagaaagaaatgaagttttttgtgtctaccactaaatgcag |
51406658 |
T |
|
| Q |
200 |
acactaatttcatgggtcgggtaggattttataggtggnnnnnnn--ctaaatggtgcacaaaaattatgacatttttaaaattgtgcaactaaattttt |
297 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406659 |
acactaatttcatgggtcgggtaggatcttataggtggaaaaaaaaactaaatggtgcacaaaaattatgacatttttaaaattgtgcaactaaattttt |
51406758 |
T |
|
| Q |
298 |
ccaaattaaaataggatactgtaattgtgaatctcaaaaattattcaatataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgcca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406759 |
ccaaattaaaataggatactgtaattgtgaatctcaaaaattattcaacataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgcca |
51406858 |
T |
|
| Q |
398 |
aacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcct |
497 |
Q |
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| T |
51406859 |
aacacttacccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagatggtggtggtgcgacggtcggctttagccatccgcaccatcct |
51406958 |
T |
|
| Q |
498 |
ttccagatctcctagaggtttccgcgtcggtagactgtggttgc |
541 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
51406959 |
ttccagatctcctggaggtttccgcgccggtagactgtggttgc |
51407002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 379 - 541
Target Start/End: Complemental strand, 50590519 - 50590357
Alignment:
| Q |
379 |
tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt |
478 |
Q |
| |
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||||| ||| ||||||||||||||| ||| | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50590519 |
tctaatttcctcaccgccaaacactcacccctctctcttttcatccaatttttaccgtcatcatgtagacatcaggtggtggtggtgcgacggtcggctt |
50590420 |
T |
|
| Q |
479 |
tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttgc |
541 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
50590419 |
tagccatccgcaccacactttccagatctcccggaggttgtcgcgtcggtggactgtggttgc |
50590357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 8817750 - 8817659
Alignment:
| Q |
375 |
tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8817750 |
tctatctaacttcttcaccgccaaacacttacccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc |
8817659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 699
Target Start/End: Original strand, 51407125 - 51407160
Alignment:
| Q |
664 |
aagtctcgattttggtggtaaaaggaggtgatgatg |
699 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
51407125 |
aagtctcgattttggtggtaagaggaggtgatgatg |
51407160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 375 - 540
Target Start/End: Complemental strand, 33758714 - 33758549
Alignment:
| Q |
375 |
tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcg |
474 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33758714 |
tctatctaacttctttaccgccaaacacttacccatttcccttttcatccaaattttgccgtcatcatgtagacatcagttggtggtggtgcgacggtcg |
33758615 |
T |
|
| Q |
475 |
gctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttg |
540 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
33758614 |
gctttagccatccgcaccatcctttccagatctcccggaggtttccgcgccggtagactgtggttg |
33758549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 379 - 539
Target Start/End: Complemental strand, 9437328 - 9437168
Alignment:
| Q |
379 |
tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt |
478 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
9437328 |
tctaacttcctcaccgccaaacacttactgctttcccttttcattcaaattttgcaatcatcgtgtagacatcagttggtggtggtgtgacggtcggctt |
9437229 |
T |
|
| Q |
479 |
tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggtt |
539 |
Q |
| |
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||||||||||||||| |||||| |||||||| ||||| | || ||||| |||||||||| |
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| T |
9437228 |
tagccatccgcaccaccctttctagatctcccgaaggttgctgcatcggtggactgtggtt |
9437168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 379 - 509
Target Start/End: Original strand, 15118002 - 15118132
Alignment:
| Q |
379 |
tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt |
478 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |
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| T |
15118002 |
tctaacttcctcaccgccaaacacttacccctttcccttttcatccaaattttgtcgtcatcatgtagacatcacttggtggtggtgtgacggtcgggtt |
15118101 |
T |
|
| Q |
479 |
tagccatccgcaccatcctttccagatctcc |
509 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
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|
| T |
15118102 |
tagccatccgcaccaccctttccagatctcc |
15118132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 500
Target Start/End: Complemental strand, 10004400 - 10004340
Alignment:
| Q |
440 |
catgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttc |
500 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||||||||||| ||||| |||||| |
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|
| T |
10004400 |
catgtagacaacagttgatggtggtgcgacgaacggctttagccatccacaccaccctttc |
10004340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 509
Target Start/End: Complemental strand, 10020390 - 10020292
Alignment:
| Q |
410 |
tttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcc |
509 |
Q |
| |
|
||||| |||||||||| ||||| | ||| |||||||||| |||||||||||||||| | || | |||||||||| ||||| ||||||||||||||| |
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|
| T |
10020390 |
tttccattttcatccagtttttgccttcaacatgtagacaacagttggtggtggtgc-aatgttgactttagccatttacaccaccctttccagatctcc |
10020292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 507
Target Start/End: Original strand, 51056053 - 51056131
Alignment:
| Q |
429 |
tttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatct |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
51056053 |
tttggcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccacaccaccctttccagatct |
51056131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 493
Target Start/End: Original strand, 7694620 - 7694705
Alignment:
| Q |
410 |
tttcccttttcatccaaa--ttttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcacca |
493 |
Q |
| |
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|||||||||||||||||| ||||| | ||| ||||||| || || | ||||||||||||||||||| |||||||||||||||||| |
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| T |
7694620 |
tttcccttttcatccaaagtttttgccttcaacatgtagccaacattaggtggtggtgcgacggtcgactttagccatccgcacca |
7694705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 27752444 - 27752354
Alignment:
| Q |
410 |
tttcccttttcatccaaatttt-gtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatccttt |
499 |
Q |
| |
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||||||||||||| |||||||| ||| ||| || |||||| |||||||| |||||||| |||||||||||||||| ||| || ||||| |
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|
| T |
27752444 |
tttcccttttcattcaaatttttgtcttcaatatttagacaaaagttggtgttggtgcgatagtcggctttagccatctgcatcacccttt |
27752354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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