View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16475_high_4 (Length: 368)
Name: NF16475_high_4
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 38959770 - 38960136
Alignment:
| Q |
12 |
caaaatgagctcgctcgattgcatgagaatactctatagatagttatcatatgatatgaccaaaacaatacctatgacaatattgttttttatcatgata |
111 |
Q |
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| T |
38959770 |
caaaatgagctccctcgattgcatgagaatactctatagatagttatcatatgatatgaccaaaacaatacctatgaaaatattgttttttatcatgata |
38959869 |
T |
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| Q |
112 |
tattggtaagaagtttccacactggtcagtagtgattaatctccgtt-ggaaacctgtgagacacacaaggtaggttttcctcaatcgnnnnnnnnnngt |
210 |
Q |
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| T |
38959870 |
tattggtaagaagtttccacactggtcagtagtgattaatctccgttggggaacctgtgagacacacaaggtaggttttcctcaatcgaaaaaaaaatgt |
38959969 |
T |
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| Q |
211 |
caatcaagttgtatcttatggtaggttttatgtgattagaagtaacattttgataaaaaccgaaggcccctagagcaatttccta--------------- |
295 |
Q |
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| T |
38959970 |
caat-aagttgtatcttatggtaggttttatgtgattagaagtaacattttgataaaaaccgaaggcccctagagcaatttcctacttctaacccctctt |
38960068 |
T |
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| Q |
296 |
-tttctctcctatatttcgtcttgcaagagaaacttgtatacatcattgtggtgtccaacacgtttgc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38960069 |
ctttctctcctatatttcgtcttgcaagagaaacttgtatacatcattgtgctgtccaacacgtttgc |
38960136 |
T |
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