View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16475_high_6 (Length: 271)
Name: NF16475_high_6
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 3679895 - 3679978
Alignment:
| Q |
19 |
aattcagctttcgacaggaggtggccagaataagctgaaatattcaacatcatcagacataagcgaaatccaaccttcatccaa |
102 |
Q |
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| T |
3679895 |
aattcagctttcgacaggaggtggccagaataagctgaaatattcagcatcatcagacataagcgaaatccgaccttcatccaa |
3679978 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 3680156 - 3680207
Alignment:
| Q |
203 |
atataaccagtatgtgagatttcttgcatatacattttgctattgggatcagtg |
256 |
Q |
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| T |
3680156 |
atataaccagtatgtga--tttcttgcatatacattttgctattgggatcagtg |
3680207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 3695539 - 3695604
Alignment:
| Q |
37 |
aggtggccagaataagctgaaatattcaacatcatcagacataagcgaaatccaaccttcatccaa |
102 |
Q |
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| T |
3695539 |
aggtggccagaacaagttggaatattcaggatcattagacataagcgaaatcctaccttcatccaa |
3695604 |
T |
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