View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16475_low_11 (Length: 228)
Name: NF16475_low_11
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 40038465 - 40038254
Alignment:
| Q |
1 |
agaaatgcaaagaaagagagaagatcaagtgaaacgtggttacttgaggcaccgcattccccaacaacaatagaaatcaagctaaactccgtaagccaca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40038465 |
agaaatgcaaagaaagagggaagatcaagtgaaacgtggttacttgaggcaccgcattccccaacaacaatagaaatcaagctaaactccgtaagccaca |
40038366 |
T |
|
| Q |
101 |
ttgttttggccagtagaggtaatgtttgcctataaaataccggtggaggtacttttacaaaatttatccttttatactttacttttatgtcttctttagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40038365 |
ttgttttggccagtagaggtaatgtttgcctataaaataccggtgaaggtacttttacaaaatttatccttttatactttacttttatgtcttctttagt |
40038266 |
T |
|
| Q |
201 |
tcacaccatatt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40038265 |
tcacaccatatt |
40038254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University