View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16475_low_2 (Length: 576)
Name: NF16475_low_2
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_low_2 |
 | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 21029965 - 21030515
Alignment:
| Q |
8 |
tgagatgaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21029965 |
tgagaagaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagaaggatacaaatgag |
21030064 |
T |
|
| Q |
108 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21030065 |
tcatagaggacaatctatgattcgacaaatgaccaagccggaaatgccacaatgcagattcaggtattctagaactgtcaaacacagtttgagactgagt |
21030164 |
T |
|
| Q |
208 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21030165 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactactataaggatgcatcttctgattaggaaactgcata |
21030264 |
T |
|
| Q |
308 |
gacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactac |
407 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21030265 |
gacaatgtgtagagaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactac |
21030364 |
T |
|
| Q |
408 |
aagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacaaaacatgatttaggtccaaatgaggagtaaaatatac |
507 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21030365 |
aagataaggaatcacacattttgaaaacagaaattaagttgactttgaattcaggagaatacagaacatgatttaggtacaaatgaggagtaaaatatac |
21030464 |
T |
|
| Q |
508 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21030465 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
21030515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 15756830 - 15756789
Alignment:
| Q |
334 |
atcacccaaaccaatcatcttctgtgatgtcacatcctgtat |
375 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
15756830 |
atcacccaaaccaatcatcttctgttatttcacatcctgtat |
15756789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 19990680 - 19990639
Alignment:
| Q |
334 |
atcacccaaaccaatcatcttctgtgatgtcacatcctgtat |
375 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
19990680 |
atcacccaaaccaatcatcttttgtgatttcacatcctgtat |
19990639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 28348178 - 28348234
Alignment:
| Q |
29 |
ggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaaca |
85 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| ||||| ||| |||||||||||||| |
|
|
| T |
28348178 |
ggcaatttcttatgtttggcaaagtgataaatgtcacaggcacctttattatcaaca |
28348234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 18481992 - 18482542
Alignment:
| Q |
8 |
tgagatgaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18481992 |
tgagaagaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
18482091 |
T |
|
| Q |
108 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18482092 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaaatgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactaagt |
18482191 |
T |
|
| Q |
208 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18482192 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcata |
18482291 |
T |
|
| Q |
308 |
gacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactac |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
18482292 |
gacaatgtgtagagaccatttgatttatcacccaaaccaatcatcttatgtgatgtcacatcctgtataacacatttattcgaaacgaaattgccactac |
18482391 |
T |
|
| Q |
408 |
aagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacaaaacatgatttaggtccaaatgaggagtaaaatatac |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
18482392 |
aagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaagagaatacagaacattatttaggtacaaatgaggagtaaaatatac |
18482491 |
T |
|
| Q |
508 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18482492 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
18482542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 38847649 - 38848199
Alignment:
| Q |
8 |
tgagatgaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| || |
|
|
| T |
38847649 |
tgagaagaactatggggaaagggcaatttcttatgtcttgcaaagtgacaaatatcacatgcagctttattatcaacaatgatagatggatacaaacgac |
38847748 |
T |
|
| Q |
108 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagt |
207 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| |||| ||| |||||| ||||| || |
|
|
| T |
38847749 |
tcatagtagataatctttgattagacaaatgaccaagcctgaaatgccataaggcagattcaggtattctagagctataaaaaacagttgaagacttaga |
38847848 |
T |
|
| Q |
208 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcata |
307 |
Q |
| |
|
|| ||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||| ||| ||||| | |||| | |||||| ||| |||||| |
|
|
| T |
38847849 |
aagactagaagtagaaatattacaagcactatgtgccactttatttggtaaaggcttaaaactattatgaagttgcaattgctgattgacaaaatgcata |
38847948 |
T |
|
| Q |
308 |
gacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactac |
407 |
Q |
| |
|
|||| | |||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38847949 |
gacagtttgtagagaccatctgatttatcacccaaaccaatcatcctctgagatgtcacatcctgtataacacatttattagaaacaaaattgacactgc |
38848048 |
T |
|
| Q |
408 |
aagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacaaaacatgatttaggtccaaatgaggagtaaaatatac |
507 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| || || |||||||| ||||| ||||||||||||||| | | | | || ||||||||||| ||| |
|
|
| T |
38848049 |
aagataaagaatcacaaattttggaaacagaaatcaaattaactttgaactcaggggaatacaaaacatgagtcaaatgaagataaggagtaaaatgtac |
38848148 |
T |
|
| Q |
508 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
558 |
Q |
| |
|
||| ||||||||||| ||||| || ||| ||||||| |||||||||||||| |
|
|
| T |
38848149 |
attgccagcataatgcacataaattgaagtaccattaggaagagtaacaag |
38848199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 28520046 - 28520596
Alignment:
| Q |
8 |
tgagatgaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520046 |
tgagaagaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
28520145 |
T |
|
| Q |
108 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520146 |
tcatagaggacaatctatgattagacaaatgaccaagcctgaagtgccacaatgtagattcaggtattctagaactatcaaacacagtttgagactgagt |
28520245 |
T |
|
| Q |
208 |
aaaactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
28520246 |
aaaactagaatcagaaatagtacaagcactatgtgcctttttatttggtaaagacttaagactgctatgaagatgcatcttttgattatgaaactgcata |
28520345 |
T |
|
| Q |
308 |
gacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactac |
407 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520346 |
gacaatgtatagagaccatttgatttatcacccaaaccaatcatcttttgtgatgtcacatcatgtataacacatttattagaaacaaaattgacactac |
28520445 |
T |
|
| Q |
408 |
aagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacaaaacatgatttaggtccaaatgaggagtaaaatatac |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
28520446 |
aagataaggaatcacacattttggaaacagaaactaagttgactttgaattcaagagaatacaaaacatgattcaggtacaaatgaggagtaaaatatac |
28520545 |
T |
|
| Q |
508 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28520546 |
attaccagcataatgaacatatatggaattaccattgggaagagtaacaag |
28520596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 6342093 - 6342002
Alignment:
| Q |
47 |
gcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgagtcatagaggacaatctatgattcgacaaatg |
138 |
Q |
| |
|
||||||||||| | ||||| | |||||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||| |||||||| |
|
|
| T |
6342093 |
gcaaaatgacatatgtcacaagtagctttattatcaacagaaatagagggatacaaattatgcattttggacaatctttgatttgacaaatg |
6342002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 6341827 - 6341778
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttat |
386 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||| | |||||||| |
|
|
| T |
6341827 |
acccaaaccaatcatcttctgggatttcatatcctgtatcagacatttat |
6341778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 210 - 558
Target Start/End: Complemental strand, 42135573 - 42135225
Alignment:
| Q |
210 |
aactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactgctatgaggatgcatcttctgattaggaaactgcataga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42135573 |
aactagaatcagaaatagtacaagcactatgtgccattttatttggtaaagacttaagactactataaggatgcatcttctgattaggaaactgcataga |
42135474 |
T |
|
| Q |
310 |
caatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactacaa |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42135473 |
caatgtgtagagaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgacactacaa |
42135374 |
T |
|
| Q |
410 |
gataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacaaaacatgatttaggtccaaatgaggagtaaaatatacat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42135373 |
gataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggagaatacagaacatgatttaggtacaaatgaggagtaaaatatacat |
42135274 |
T |
|
| Q |
510 |
taccagcataatgaacatatatggaattaccattgggaagagtaacaag |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42135273 |
taccagcataatgaacatatatggaattaccattgggaagagtaacaag |
42135225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 42139410 - 42139203
Alignment:
| Q |
8 |
tgagatgaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42139410 |
tgagaagaactatgggaaaagggcaatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagaaggatacaaatgag |
42139311 |
T |
|
| Q |
108 |
tcatagaggacaatctatgattcgacaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42139310 |
tcatagaggacaatctatgattcgacaaatgaccaagccggaaatgccacaatgcagattcaggtattctagaactgtcaaacacagtttgagactgagt |
42139211 |
T |
|
| Q |
208 |
aaaactag |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
42139210 |
aaaactag |
42139203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 26471550 - 26471506
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacaca |
381 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
26471550 |
acccaaaccaatcatcttctgtgttttcacatcctgtatcacaca |
26471506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 32 - 263
Target Start/End: Original strand, 17479758 - 17479988
Alignment:
| Q |
32 |
aatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgagtcatagaggacaatctatgattcg |
131 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| || | ||| ||||| | |
|
|
| T |
17479758 |
aatttcttatggctagcaag-tgacaaacatcacatgctggtttattatcaacaataatagatggatacaaatgacacatagaagatagtctttgattgg |
17479856 |
T |
|
| Q |
132 |
acaaatgaccaagcctgaagtgccacaatgcagattcaggtattctagaactatcaaacacagtttgagactgagtaaaactagaatcagaaatagtaca |
231 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||| |||||||| | ||| ||| |||||||| ||||||||| ||||| ||||| |||| |
|
|
| T |
17479857 |
acaaatgaccaagcctgaaatgccacaaggtcgattcaggtatcctagaactgttaaaaacaacttgagacttggtaaaactaaaatcaaaaatattaca |
17479956 |
T |
|
| Q |
232 |
agcactatgtgccattttatttggtaaagact |
263 |
Q |
| |
|
|||||| ||||| | |||||| |||||||||| |
|
|
| T |
17479957 |
agcactgtgtgctactttattaggtaaagact |
17479988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 300 - 465
Target Start/End: Original strand, 17481288 - 17481452
Alignment:
| Q |
300 |
actgcatagacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaatt |
399 |
Q |
| |
|
|||||||| ||| | |||||| ||||| ||| | ||||||||||||||||||| || ||||||||||||||||||||| || || ||||| | |||||| |
|
|
| T |
17481288 |
actgcataaacattttgtagataccatctgactgatcacccaaaccaatcatcctccgtgatgtcacatcctgtataatgcacttcttagagataaaatt |
17481387 |
T |
|
| Q |
400 |
gacactacaagataaggaatcacacattttggaaacagaaattaagttgactttgaattcaggaga |
465 |
Q |
| |
|
| |||||| ||||| || |||||||||||||| ||| | || || |||| ||||||||||||||| |
|
|
| T |
17481388 |
-aaactacaggataatgactcacacattttggagacatatatcaaattgaatttgaattcaggaga |
17481452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 8835650 - 8835606
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacaca |
381 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
8835650 |
acccaaaccaatcatcttctgtgttttcacatcctgtatcacaca |
8835606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 55309585 - 55309541
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacaca |
381 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
55309585 |
acccaaaccaatcatcttctgtgttttcacatcctgtatcacaca |
55309541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 2201 - 2160
Alignment:
| Q |
334 |
atcacccaaaccaatcatcttctgtgatgtcacatcctgtat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2201 |
atcacccaaaccaatcatcttctgtgatttcacatcctgtat |
2160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 403
Target Start/End: Original strand, 18834589 - 18834685
Alignment:
| Q |
307 |
agacaatgtgtagaaaccatttgatttatcacccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttattagaaacaaaattgaca |
403 |
Q |
| |
|
||||||| |||||| |||| |||| |||||| |||||||||||| |||||||| ||||||| || ||||||||||| |||| || ||| |||||| |
|
|
| T |
18834589 |
agacaatttgtagaggccatcagattgatcacctaaaccaatcatcctctgtgatttcacatcatgcataacacatttgttagcaagaaatttgaca |
18834685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 5386571 - 5386626
Alignment:
| Q |
47 |
gcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaa |
102 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||||| || ||||| |
|
|
| T |
5386571 |
gcaaaatgacaaatatcacatgtagctttattatcaacaaaaatagaagggtacaa |
5386626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 18834321 - 18834445
Alignment:
| Q |
32 |
aatttcttatgtctggcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgagtcatagaggacaatctatgattcg |
131 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||| || ||||||||||||| || ||||| || ||||| | | | |||| || ||||| ||||| | |
|
|
| T |
18834321 |
aatttcttatgacgagcaaaacgacaaacatcacaagctactttattatcaacgattatagaagggtacaactaacacgtagatgataatctttgatttg |
18834420 |
T |
|
| Q |
132 |
acaaatgaccaagcctgaagtgcca |
156 |
Q |
| |
|
|||||||||| | | |||||||||| |
|
|
| T |
18834421 |
acaaatgacctaacttgaagtgcca |
18834445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 17129189 - 17129140
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttat |
386 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| ||||| |||||||||| |
|
|
| T |
17129189 |
acccaaaccaatcatcttctgagatttcatatcatgtatgacacatttat |
17129140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 28017122 - 28017031
Alignment:
| Q |
47 |
gcaaaatgacaaacatcacatgcagctttattatcaacaataatagagggatacaaatgagtcatagaggacaatctatgattcgacaaatg |
138 |
Q |
| |
|
||||||||||| | ||||| | |||||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||| |||||||| |
|
|
| T |
28017122 |
gcaaaatgacatatgtcacaagtagctttattatcaacagaaatagagggatacaaattatgcattttggacaatctttgatttgacaaatg |
28017031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 13130218 - 13130180
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtat |
375 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13130218 |
acccaaaccaatcatcttctgtgttttcacatcctgtat |
13130180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 20484335 - 20484384
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttat |
386 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||| | |||||||| |
|
|
| T |
20484335 |
acccaaaccaatcatcttctgggatttcatatcctgtatcagacatttat |
20484384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 28016856 - 28016807
Alignment:
| Q |
337 |
acccaaaccaatcatcttctgtgatgtcacatcctgtataacacatttat |
386 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||| | |||||||| |
|
|
| T |
28016856 |
acccaaaccaatcatcttctgggatttcatatcctgtatcagacatttat |
28016807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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