View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16475_low_3 (Length: 418)
Name: NF16475_low_3
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 45148354 - 45147986
Alignment:
| Q |
18 |
cttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatggaattggtacatttcacaatgtatgtgtct |
117 |
Q |
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| T |
45148354 |
cttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatggaattggtacatttcacaatgtatgtgtct |
45148255 |
T |
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| Q |
118 |
cttgctttctgaactggaaaacagaagttatgtaaatgtttccctctcagattatagttcgcgcgcattgtttgaaggagttggctgctctgggcgctac |
217 |
Q |
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| T |
45148254 |
cttgctttttgaactggaaaacagaagttatgtaaatgtttccctctcagattatagttcgcgcgcattgtttgaaggagtcggctgctctgggcgctac |
45148155 |
T |
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| Q |
218 |
aactctggaattttctcgtgaccgcgatcatgtctttcgcttttttacaaaatcactaactactttaacttctgcgtttgattgaatcgcttttgagttt |
317 |
Q |
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| T |
45148154 |
aactctggaattttctcgtgaccgcgatcatgtctttcgcttttttagaaaatcactaactactttaacttctgcgtttgattgaatcgcttttgagttt |
45148055 |
T |
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| Q |
318 |
cagtttcaatttgttttccaaagctatcttcccttattaccctttgtaattgtctgctatggctggaag |
386 |
Q |
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| T |
45148054 |
cagtttcaatttgttttccaaagctatcttcctttattaccctttgtaattgtctgccatggctggaag |
45147986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 24137549 - 24137729
Alignment:
| Q |
18 |
cttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatgtgagtggaaatggaattggtacatttcacaatgtatgtgtct |
117 |
Q |
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| T |
24137549 |
cttgtaaggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatgtgaatagaaatggaattggtacatttgacaatatatgggtct |
24137648 |
T |
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| Q |
118 |
cttgctttctgaac-tggaaaacagaagttatgtaaatgtttccctctcagattatagttcgcgcgcattgtttgaaggag |
197 |
Q |
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| T |
24137649 |
catgctttctgaacttaaaaaactgaagttatttaaatttctccctctcagattatagttcacgcgcactgtttgaaggag |
24137729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 5408747 - 5408803
Alignment:
| Q |
327 |
tttgttttccaaagctatcttcccttattaccctttgtaattgtctgctatggctgg |
383 |
Q |
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| T |
5408747 |
tttgttttccaatgttatcttcccttattgccctttataattgtttgccatagctgg |
5408803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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