View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16475_low_4 (Length: 380)
Name: NF16475_low_4
Description: NF16475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16475_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 42492138 - 42492489
Alignment:
| Q |
11 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42492138 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactgaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
42492237 |
T |
|
| Q |
111 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaatagtagagtacgtataagttcttgacccnnnnnnnnnnnn |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
42492238 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactagtgtataaataatagagtacgtataagttcttgaccc--aaaaaaaaat |
42492335 |
T |
|
| Q |
211 |
nnttacacataagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagaggatcggattgacatc |
310 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
42492336 |
aattacgaataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataa-taatgcagaaaggatcgtattgacatc |
42492434 |
T |
|
| Q |
311 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42492435 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
42492489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 52365039 - 52364697
Alignment:
| Q |
11 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
52365039 |
atgaaaacccattattaccctttaatttcaccatcgtaacaaactga--------aatgatgagaatcccttatattgttgaattaatgttagttaatga |
52364948 |
T |
|
| Q |
111 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaatagtagagtacgtataagttcttgacccnnnnnnnnnnnn |
210 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
52364947 |
gtcaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccggtgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaa- |
52364849 |
T |
|
| Q |
211 |
nnttacacataagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagaggatcggattgacatc |
310 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
52364848 |
--ttacgtataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataat-aatgcagaaaggatcggattgacatc |
52364752 |
T |
|
| Q |
311 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
52364751 |
atttacatgtggttacttgctgattgatttccttgaatgcttctttgtagaattt |
52364697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 9936039 - 9935689
Alignment:
| Q |
11 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9936039 |
atgaaaacccatgattaccctttaatttcaccatcgtaacatactaagatactgaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
9935940 |
T |
|
| Q |
111 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaatagtagagtacgtataagttcttgacccnnnnnnnnnnnn |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
9935939 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactagtgtataaataatagagtacgtataagttcttgaccc---aaaaaaaaa |
9935843 |
T |
|
| Q |
211 |
nnttacacataagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagaggatcggattgacatc |
310 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
9935842 |
aattacgaataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataa-taatgcagaaaggatcgtattgacatc |
9935744 |
T |
|
| Q |
311 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935743 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
9935689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 6696246 - 6696596
Alignment:
| Q |
11 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6696246 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactgaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
6696345 |
T |
|
| Q |
111 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaatagtagagtacgtataagttcttgacccnnnnnnnnnnnn |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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|
| T |
6696346 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcactactgtataaataatagagtacgtataagttcttgaccc---aaaaaaaaa |
6696442 |
T |
|
| Q |
211 |
nnttacacataagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagaggatcggattgacatc |
310 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
6696443 |
aattacgaataagttgttttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataa-taatgcagaaaggatcgtattgacatc |
6696541 |
T |
|
| Q |
311 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6696542 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
6696596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 39345448 - 39345793
Alignment:
| Q |
11 |
atgaaaacccattattaccctttaatttcaccatcgtaacatactaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatga |
110 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39345448 |
atgaaaatccattattacccttttatttcaccatcgtaacaaactga--------aatgatgaggatcccttatattgttgaattaatgttagttaatga |
39345539 |
T |
|
| Q |
111 |
gacaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaatagtagagtacgtataagttcttgacccnnnnnnnnnnnn |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39345540 |
gtcaataaagtgattgaaaactctctaatactaaatgcaattgcatcaccagtgtataaataatagagtacgtataagttcttgacccaaaaaaaaaaaa |
39345639 |
T |
|
| Q |
211 |
nnttacacataagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagaggatcggattgacatc |
310 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
39345640 |
aattacgtataagttgctttattgtctacatggactagactccattttcgtaaagcatatgcataaaaataa-caatgcagaaaggatcggattgacatc |
39345738 |
T |
|
| Q |
311 |
atttacatgtggttacttgctgattgatttccttgaatgtttctttgtagaattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39345739 |
atttacatgtggttacttgctgattgatttccttgaatgcttctttgtagaattt |
39345793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 21936483 - 21936341
Alignment:
| Q |
30 |
ctttaatttcaccatcgtaacata-ctaagatactcaaatgatgaggatcccttatattgttgaattaatgttagttaatgagacaataaagtgattgaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21936483 |
ctttaatttcaccatcgtaacataactaagatactgaaatgatgaggatcc-ttatattgttgaattatggttagttaatgagacaataaagtgattgaa |
21936385 |
T |
|
| Q |
129 |
aactctctaatactaaatgcaattgcatcaccagtgtataaata |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21936384 |
aactctctaatactaaatgcaattgcatcaccagtatataaata |
21936341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 356
Target Start/End: Complemental strand, 21936027 - 21935888
Alignment:
| Q |
220 |
taagttgctttattttctacatggactaggctccattttcgtaaagcatatgcataaaaataattaatgcagagagga------tcggattgacatcatt |
313 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
21936027 |
taagttgctttattgtctacatgaactacgctccattttcgtaaagcatatgcataaaaataa-taatgcagaaaggatcggattcggattgacatcatt |
21935929 |
T |
|
| Q |
314 |
tacatgtggttacttgctgattgatttccttgaatgtttcttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21935928 |
tacatgtggttacttgctgattgatttc--tgaatgtttcttt |
21935888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 21936080 - 21936048
Alignment:
| Q |
166 |
ataaatagtagagtacgtataagttcttgaccc |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
21936080 |
ataaataatagagtacgtataagttcttgaccc |
21936048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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