View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16476_high_1 (Length: 407)
Name: NF16476_high_1
Description: NF16476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16476_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 45015158 - 45014779
Alignment:
| Q |
19 |
gtaactgactaatccacatggaattaataaaacagagaaaatagtttccacaaatgacatgcaaatccagcattaggcaagaaaatcttatgattaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45015158 |
gtaactgactaatccacatggaattaataaaacagagaaaatagtttccacaaatgacatgcaaatccagcattaggcaagaaaattttatgattaatct |
45015059 |
T |
|
| Q |
119 |
tctggagatggagcaatagcagcaggtgctggtgaaggagcagcattttgaccgtcacgtgaaaatccaaatttcttaataagttcatttgcaatgagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45015058 |
tctggagatggagcaatagcagcaggtgctggtgaaggagcagcattttgaccgtcacgtaaaaatccaaatttcttaataagttcatttgcaatgagct |
45014959 |
T |
|
| Q |
219 |
cattagcactgtctgagggatgatactcgtcccaaaacacatatttgcttctgtctgagcatagtgttgatgcaggtacacatgtaagtgctggtctaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45014958 |
cattagcactgtctgagggatgatactcgtcccaaaacacatatttgcttctgtctgagcatagcgttgatgcaggtacacatgtaagtgctggtctaat |
45014859 |
T |
|
| Q |
319 |
tctcccaaaggaacaacatggtgaatctgagttttggaatcctacaaagcaaatgtgattaatatcagtattagtataat |
398 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45014858 |
tctcccaaaggaacaacagggtgaatctgagttttggaatcctacaaagcaaatgtgattaatatcagtattagtataat |
45014779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 364
Target Start/End: Original strand, 11665478 - 11665657
Alignment:
| Q |
185 |
ccaaatttcttaataagttcatttgcaatgagctcattagcactgtctgagggatgatactcgtcccaaaacacatatttgcttctgtctgagcatagtg |
284 |
Q |
| |
|
||||| ||||| || |||||| | ||||| || |||||||| ||||||| ||||||||||| |||||||| || || |||||||| ||| || | || |
|
|
| T |
11665478 |
ccaaacttcttgatcagttcagtggcaattagttcattagctttgtctgatggatgatactcatcccaaaatacgtacttgcttctatctttacacaatg |
11665577 |
T |
|
| Q |
285 |
ttgatgcaggtacacatgtaagtgctggtctaattctcccaaaggaacaacatggtgaatctgagttttggaatcctaca |
364 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
11665578 |
ttgatgctggtatacatgtaagagctggtctaatcctcccaaatgaacaacatggtgagtctgcgttttggaaccctaca |
11665657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University