View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16476_high_1_N (Length: 427)

Name: NF16476_high_1_N
Description: NF16476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16476_high_1_N
NF16476_high_1_N
[»] chr4 (17 HSPs)
chr4 (71-398)||(45366280-45366607)
chr4 (194-345)||(48870351-48870496)
chr4 (194-345)||(48886037-48886182)
chr4 (21-71)||(45385889-45385939)
chr4 (71-171)||(45385073-45385176)
chr4 (71-276)||(7771093-7771298)
chr4 (71-138)||(7789778-7789845)
chr4 (200-354)||(48875661-48875809)
chr4 (227-278)||(48898561-48898612)
chr4 (237-354)||(37827106-37827217)
chr4 (189-278)||(45372251-45372340)
chr4 (226-287)||(48902779-48902840)
chr4 (71-113)||(48862933-48862975)
chr4 (301-370)||(48705455-48705524)
chr4 (242-283)||(50250967-50251008)
chr4 (71-127)||(7765310-7765366)
chr4 (307-355)||(50668968-50669016)
[»] chr8 (2 HSPs)
chr8 (189-276)||(15348666-15348753)
chr8 (71-125)||(15348551-15348605)
[»] scaffold0508 (1 HSPs)
scaffold0508 (217-279)||(12148-12210)
[»] chr3 (2 HSPs)
chr3 (236-355)||(47452018-47452131)
chr3 (189-276)||(11015703-11015790)
[»] chr5 (1 HSPs)
chr5 (245-283)||(29696072-29696110)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 71 - 398
Target Start/End: Complemental strand, 45366607 - 45366280
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgcctaacccgatctatagatgtaga 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45366607 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 45366508  T
Q  171 tgcatcgcctgaccatgattctgcttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttata 270  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45366507 tgcatcggttgaccatgattctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttata 45366408  T
Q  271 cttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaagatacctttgcctccttttgcttctcatttagatg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45366407 cttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaaaatacctttgcctccttttgcttctcatttagatg 45366308  T
Q  371 atggaatagattatttctatggtttttg 398  Q
    ||||||||||||||||||||||||||||    
T  45366307 atggaatagattatttctatggtttttg 45366280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 345
Target Start/End: Original strand, 48870351 - 48870496
Alignment:
Q  194 cttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaacttt 293  Q
    ||||| |||||||| ||||||||||||| || ||||||| |||| || ||||||||||||||||||||||||||||| | ||||| ||| ||  |||       
T  48870351 cttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaac--- 48870447  T
Q  294 aagcctttacctttggaatccatccactggatttcataaaaagatacctttg 345  Q
       ||| ||||| |||||||||||||| |||||||| ||| | |||||||||    
T  48870448 ---cctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48870496  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 345
Target Start/End: Original strand, 48886037 - 48886182
Alignment:
Q  194 cttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaacttt 293  Q
    ||||| |||||||| ||||||||||||| || ||||||| |||| || ||||||||||||||||||||||||||||| | ||||| ||| ||  |||       
T  48886037 cttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaac--- 48886133  T
Q  294 aagcctttacctttggaatccatccactggatttcataaaaagatacctttg 345  Q
       ||| ||||| |||||||||||||| |||||||| ||| | |||||||||    
T  48886134 ---cctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48886182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 45385939 - 45385889
Alignment:
Q  21 acatcatcatcgatactcccaccgcccgaaaatatcaaaaaggacatccaa 71  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  45385939 acatcttcatcgatactcccaccgcccgaatatatcaaaaaggacatccaa 45385889  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 45385176 - 45385073
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgt----agagttttattcatatcaacttcagctcgcctaacccgatctatagatg 166  Q
    |||||||| |||||||||| |||||||||||| ||| |||| |||||    |||||||||||||||||||||||||||||   | | ||||||||||||     
T  45385176 actttgcatattcacattt-caactttccgccacaacacaccctcgttggtagagttttattcatatcaacttcagctcgtaaatctcgatctatagatt 45385078  T
Q  167 tagat 171  Q
    |||||    
T  45385077 tagat 45385073  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 7771093 - 7771298
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgcctaacccgatctatagatgtaga 170  Q
    |||||| ||||||||||||||||||| || | |||| ||||||| ||||| |||||| ||||||||||  | |||    ||  |||||||||||| | ||    
T  7771093 actttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcatatcaactcaatctcatgaaattcgatctatagattttga 7771192  T
Q  171 tgcatcgcctgaccatgattctgcttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttata 270  Q
     ||||  | | || ||||| |||||||| | || ||| |||||  |||||| || ||||||| |  | || |||||| |||||| |||||||| ||||||    
T  7771193 agcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttata 7771292  T
Q  271 cttttg 276  Q
    ||||||    
T  7771293 cttttg 7771298  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 7789778 - 7789845
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaact 138  Q
    |||||| ||||||||||||||||||| || |||||| ||||||| ||||| ||||||  |||||||||    
T  7789778 actttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaact 7789845  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 354
Target Start/End: Original strand, 48875661 - 48875809
Alignment:
Q  200 tcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcct 299  Q
    |||||||| ||||||| ||||| ||  || | | |||| || ||||||||||||| || |||||||||||||| ||||| |||| || ||      ||||    
T  48875661 tcaatcttgattttcttcttcctgaacctaactatgattttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaa------gcct 48875754  T
Q  300 ttacctttggaatccatccactggatttcataaaaagatacctttgcctcctttt 354  Q
     ||||| |||||||||||||| |||||||| ||| | |||||| || ||||||||    
T  48875755 ctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcctttt 48875809  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 48898561 - 48898612
Alignment:
Q  227 cttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 278  Q
    |||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  48898561 cttattctgatcttgaactcaaatgttcatgtagaggctttatacttttgca 48898612  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 37827217 - 37827106
Alignment:
Q  237 tcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaag 336  Q
    ||||||||||||||||||| ||||||| ||| || |||||||| |||      |||||| | | ||| | ||||||||||||||||||||||| ||| |     
T  37827217 tcttcaaattaaaggttcaggtagagggtttgtatttttgcaccgtt------ctttaaacatctacatatggaatccatccactggatttcacaaacaa 37827124  T
Q  337 atacctttgcctcctttt 354  Q
    ||||| ||| ||||||||    
T  37827123 atacccttgtctcctttt 37827106  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 45372340 - 45372251
Alignment:
Q  189 ttctgcttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 278  Q
    |||||||||||| || |||  |||| ||  |||| | ||| ||| ||||||| |||||||||||||||||||||| |||||| |||||||    
T  45372340 ttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 48902779 - 48902840
Alignment:
Q  226 tcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttcttt 287  Q
    ||||||| ||||||  |||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  48902779 tcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgcactgttcttt 48902840  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 48862933 - 48862975
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacac 113  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  48862933 actttgcaaattcacattttcaacttactgccgcaacacacac 48862975  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 48705524 - 48705455
Alignment:
Q  301 tacctttggaatccatccactggatttcataaaaagatacctttgcctccttttgcttctcatttagatg 370  Q
    ||||| ||||||||||| ||||||||||| ||| | ||||||||| | ||||||| |||  |||||||||    
T  48705524 tacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatg 48705455  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 50251008 - 50250967
Alignment:
Q  242 aaattaaaggttcatgtagaggctttatacttttgcactgtt 283  Q
    |||||||||||||||||||||| |||||| |||| |||||||    
T  50251008 aaattaaaggttcatgtagaggatttatatttttccactgtt 50250967  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 7765310 - 7765366
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttat 127  Q
    ||||||||||||||||||| ||||||  |   |||||||||||||||||| ||||||    
T  7765310 actttgcaaattcacatttccaacttaaccatgcaaaacacactcgtagatttttat 7765366  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 50668968 - 50669016
Alignment:
Q  307 tggaatccatccactggatttcataaaaagatacctttgcctccttttg 355  Q
    ||||||||||||||  ||||||||||| ||||||| ||| |||||||||    
T  50668968 tggaatccatccaccagatttcataaacagataccattgtctccttttg 50669016  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 15348666 - 15348753
Alignment:
Q  189 ttctgcttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 276  Q
    |||||||||||||||| || ||||||| | |||  |   | |||||||| || |||||||||||||||||||||||||| ||||||||    
T  15348666 ttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattaaaggttcatgtagaggctttgtacttttg 15348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 15348551 - 15348605
Alignment:
Q  71 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagtttt 125  Q
    |||| |||||||||||||||||| || ||||||||| ||||||||||||| ||||    
T  15348551 acttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaatttt 15348605  T

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Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 12148 - 12210
Alignment:
Q  217 cttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcac 279  Q
    ||||| || ||| ||| |||||||||||||||||||||||||||| | |||||| ||||||||    
T  12148 cttccggaatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgcac 12210  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 47452131 - 47452018
Alignment:
Q  236 atcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaa 335  Q
    ||||| |||||||||||||||||||||| |||||||||||    ||||      ||| || | | ||| | |||||||||||||||||| |||| ||| |    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatacttttaagttgtt------cttcaaacatctacatatggaatccatccactggagttcacaaaca 47452038  T
Q  336 gatacctttgcctccttttg 355  Q
     |||||||||||||||||||    
T  47452037 aatacctttgcctccttttg 47452018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 11015790 - 11015703
Alignment:
Q  189 ttctgcttcactcaatcttcattttctgcttcccgagtcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 276  Q
    |||| ||||||| || ||| ||||| ||| ||| || |||||||||  |||| |||||||| ||||||||||||| |||||| |||||    
T  11015790 ttctacttcactgaaccttaattttatgcctccagaatcttattctagtcttgaaattaaaagttcatgtagaggatttatagttttg 11015703  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 29696072 - 29696110
Alignment:
Q  245 ttaaaggttcatgtagaggctttatacttttgcactgtt 283  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  29696072 ttaaaggttcgtgtagaggctttatacttttgaactgtt 29696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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