View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16476_high_2 (Length: 384)
Name: NF16476_high_2
Description: NF16476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16476_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 61 - 364
Target Start/End: Original strand, 31541573 - 31541866
Alignment:
| Q |
61 |
gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnnnngatgatcttaaattaattatt |
160 |
Q |
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| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa-----------gatgatcttaaattaattatt |
31541661 |
T |
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| Q |
161 |
aacgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagc |
259 |
Q |
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| T |
31541662 |
aacgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaac |
31541761 |
T |
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| Q |
260 |
aacaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagagnnnnnnnccatcattcacacgtgatg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
31541762 |
aacaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagagagaaaaaccatcattcacacgtgttg |
31541861 |
T |
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