View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16476_high_7 (Length: 324)

Name: NF16476_high_7
Description: NF16476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16476_high_7
NF16476_high_7
[»] chr6 (10 HSPs)
chr6 (1-307)||(2926670-2926976)
chr6 (1-307)||(2934109-2934415)
chr6 (11-307)||(3004043-3004339)
chr6 (5-307)||(2951456-2951758)
chr6 (1-304)||(2997662-2997965)
chr6 (12-307)||(2982387-2982688)
chr6 (13-307)||(2659265-2659559)
chr6 (1-304)||(2963992-2964301)
chr6 (1-167)||(2972508-2972676)
chr6 (205-304)||(2973727-2973826)
[»] chr7 (1 HSPs)
chr7 (1-307)||(3338691-3338997)
[»] scaffold0024 (1 HSPs)
scaffold0024 (12-307)||(35486-35784)
[»] chr3 (1 HSPs)
chr3 (192-293)||(49618096-49618197)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2926670 - 2926976
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 100  Q
    ||||||||||||||| ||||| || ||||| | ||||||||||| | ||||  |||||||||||||||| ||||| ||||| |||||||||| |||||||    
2926670 aaccgatgactgttgtatctataaggtcccctatgttattcgcagacacaacaaagacgcatacacccccaaggtcgtttctattggcccctttcaccac 2926769  T
101 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 200  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
2926770 ggtcaaccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtcggctaca 2926869  T
201 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 300  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
2926870 tagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttat 2926969  T
301 aattcaa 307  Q
    |||||||    
2926970 aattcaa 2926976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2934109 - 2934415
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 100  Q
    ||||||||||||||||||||| || ||||| | ||||||||||| | ||||  |||||||||||||||| |  || |||||||||||||||| |||||||    
2934109 aaccgatgactgttgcatctataaggtcccttatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccac 2934208  T
101 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
2934209 ggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctaca 2934308  T
201 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 300  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
2934309 tagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttat 2934408  T
301 aattcaa 307  Q
    |||||||    
2934409 aattcaa 2934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 3004339 - 3004043
Alignment:
11 tgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccccc 110  Q
    |||||||||||||| ||||| | ||||||||||| | ||||  |||||||||||||||| |  || |||||||||||||||| |||||||||||||||||    
3004339 tgttgcatctacaaggtcccctatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccacggtcaccccc 3004240  T
111 agcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctat 210  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
3004239 agctccaaaacatggaaaatcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctacatagaatctgt 3004140  T
211 cttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaa 307  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3004139 cttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaa 3004043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 307
Target Start/End: Original strand, 2951456 - 2951758
Alignment:
5 gatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtc 104  Q
    ||||| |||||||||||||| ||||| | |||||||||||   ||||  |||||||||||||||| ||||| |||||||||||||||| |||||| ||||    
2951456 gatgagtgttgcatctacaaggtcccctatgttattcgcaggcacaacaaagacgcatacacccccaaggtcgtttccattggcccctttcaccatggtc 2951555  T
105 acccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacataga 204  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||   |||||||||    
2951556 acccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagttgtctacataga 2951655  T
205 atctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 304  Q
    |||||||||||||  ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2951656 atctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 2951755  T
305 caa 307  Q
    |||    
2951756 caa 2951758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 2997965 - 2997662
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 100  Q
    ||||| |||||||||||||||||| ||||| |||   |||||||||  ||| | ||||||||||||||| |  || |||||||||||||||| ||||||     
2997965 aaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgcagacgcatacacccccactgtcgtttccattggcccctttcaccat 2997866  T
101 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 200  Q
    ||||| || ||||| ||||||||||||  ||||||||||||| |||| || | |||||||||| ||||  || |||||||||| |||||||| ||||||     
2997865 ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtatgctacg 2997766  T
201 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 300  Q
    |||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
2997765 tagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttttat 2997666  T
301 aatt 304  Q
    ||||    
2997665 aatt 2997662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 2982387 - 2982688
Alignment:
12 gttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccc--- 108  Q
    ||||||||||||| ||||| ||||||||||||| |  ||| ||| ||||||||||||| || || |||||||||||||||| ||||||||||||||        
2982387 gttgcatctacaaggtcccctctgttattcgcacagtcaacgaaaacgcatacacccccaatgtcgtttccattggcccctttcaccacggtcacctagg 2982486  T
109 ---ccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaa 205  Q
       ||| || |||||||||||| ||||||| |||||| |||| || | |||||| ||| ||||| || ||| |||||||||||| ||||||||| ||||     
2982487 cctccatctccaaaacatggaacgtcagaagctcattcacttcaaagcttttcttcaacgaaccgaggcatctttaaacgacttggtctgctacgtagat 2982586  T
206 tctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattc 305  Q
    ||||||||||||  ||||||||  | |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
2982587 tctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattc 2982686  T
306 aa 307  Q
    ||    
2982687 aa 2982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 2659559 - 2659265
Alignment:
13 ttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcacccccag 112  Q
    |||||||||||| ||||| |||| |||||||| |  ||| ||| | ||||||||||| |   | |||||||||||||||| |||||| | ||||||||||    
2659559 ttgcatctacaaggtcccctctgctattcgcacactcaacgaaaaagcatacacccccactctcgtttccattggcccctttcaccatgatcacccccag 2659460  T
113 cttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctatct 212  Q
    || |||||||||||| |||| |||||||||||||| || | |||||||||| |||||||  |||||||| ||  ||| ||| || ||||| |||||| ||    
2659459 ctccaaaacatggaacgtcacaaactcatttacttgaaagcttttctccaacgaaccaatgcatgtttagacaccttggtcagcaacataaaatctaact 2659360  T
213 tatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaa 307  Q
    |||||  ||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||    
2659359 tatctcgtttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaa 2659265  T

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Target: chr6; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 2963992 - 2964301
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 100  Q
    |||| |||| |||||||||||||| ||||| |||| |||||||| |  ||| ||| ||||||||||||| ||| | |||||||| ||||||| |||||||    
2963992 aacctatgattgttgcatctacaaggtcccctctgatattcgcacactcaacgaaaacgcatacacccccaagttcgtttccatcggcccctttcaccac 2964091  T
101 ggtcacccccagc------ttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtct 194  Q
    ||||||||||| |      | |||||||||||| | || |||||||||||||| || |||||||||||| ||||| |||||  |||||||||  | ||||    
2964092 ggtcacccccacccccagatccaaaacatggaacgacaaaaactcatttacttcaaagattttctccaacgaaccgagacaactttaaacgaaatggtct 2964191  T
195 gctacatagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgc 294  Q
     |||||||||  |||||||||||  ||||||| | | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |     
2964192 actacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctgg 2964291  T
295 ttttataatt 304  Q
    ||||||||||    
2964292 ttttataatt 2964301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2972508 - 2972676
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcata--cacccctaaggttgtttccattggcccctatcacc 98  Q
    ||||| |||||||||||||||||| ||||| |||   |||||||||  ||| ||||| |||||  ||| || || || |||||||||||||||| |||||    
2972508 aaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgaagaggcatatacactcccaaagtcgtttccattggcccctttcacc 2972607  T
99 acggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaa 167  Q
    ||| |||  ||||||| |||||||||||| |||| |||||||||||||| || | ||||||| ||||||    
2972608 acgttcaaacccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaaagaa 2972676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 2973727 - 2973826
Alignment:
205 atctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 304  Q
    |||||||||||||  ||||||| | | ||||||| |||||||| |||||||||||  |||||||||||||||||| ||||| ||||||| ||||||||||    
2973727 atctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataatt 2973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 3338691 - 3338997
Alignment:
1 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||    
3338691 aaccgatgactgttgcatctacaaagtaccctctgttattcgcaaacacaatgaagacgcatacacccctaagttcgtttccattggcccctttcaccac 3338790  T
101 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 200  Q
    ||| |  |||  ||  ||||||||||| |||| |||||||||||||| || | |||||||||| ||||| || |||||||||| ||||| |||| ||||     
3338791 ggtaaaacccgactctaaaacatggaacgtcacaaactcatttacttcaaagcttttctccaacgaaccgaggcatgtttaaaagacttggtcttctacg 3338890  T
201 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 300  Q
    |||| ||||||||| ||  ||||||||||| |||||| |||  |||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
3338891 tagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatcgattccggttttat 3338990  T
301 aattcaa 307  Q
    |||||||    
3338991 aattcaa 3338997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 35784 - 35486
Alignment:
12 gttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccccca 111  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||    
35784 gttgcatctacaaggtcccctctgttattcgcaaacacaatgaagacgcatacacccctaatttcgtttccattggcccctttcaccacggtcaccccca 35685  T
112 gcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctatc 211  Q
    |||  ||||||||||| |||| |||||||||||||| || |||||||||||| |||||||  ||| ||||| |  |||  || || ||||| | ||||||    
35684 gctcaaaaacatggaacgtcacaaactcatttacttcaaagattttctccaacgaaccaatgcatctttaagcatcttgatcagcgacatatattctatc 35585  T
212 ttatcttttttcaaacgttcttattccgaaaccctaccattttctc---atgatgaacttgttaagttaatcttaatcgattccgcttttataattcaa 307  Q
    ||||||  ||||||| ||| |||||| ||||||||| ||||| |||   |||| ||||||||||||||||||||||||||||||| |||||||||||||    
35584 ttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttttataattcaa 35486  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 293
Target Start/End: Original strand, 49618096 - 49618197
Alignment:
192 tctgctacatagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattc 291  Q
    ||||||||||||| || |||||||||  |||||| |  ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||| |||||    
49618096 tctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattc 49618195  T
292 cg 293  Q
    ||    
49618196 cg 49618197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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