View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16477_high_3 (Length: 403)
Name: NF16477_high_3
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 23434110 - 23433936
Alignment:
| Q |
84 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccacaaacataataatagttatcttacaaaataac |
183 |
Q |
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| T |
23434110 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccgcaaacataataatagttatcttacaaaataac |
23434011 |
T |
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| Q |
184 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactagttgaatctcattatgttcttct |
258 |
Q |
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| T |
23434010 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactggttgaatctcattatgttcttct |
23433936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 23433869 - 23433808
Alignment:
| Q |
326 |
cacaagcttaatctcattctattcttcggggtttttggggttagttttgtttgcttaatatt |
387 |
Q |
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| T |
23433869 |
cacaagcttaatctcattctattcttcggggtttctggggttagttttgtttgcttaatatt |
23433808 |
T |
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