View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16477_low_1 (Length: 497)
Name: NF16477_low_1
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_low_1 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 101 - 465
Target Start/End: Complemental strand, 231076 - 230714
Alignment:
| Q |
101 |
attggaagcaagatcatcatcctgtttgtgtacctcttcatttataaagaaaaccatatgaattttaccttcatgtgtacctctttattcattgttccat |
200 |
Q |
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| T |
231076 |
attggaagcaacatcatc--cctgttcgtctacctcttcatttataaagaaaaccatatgaattttaccttcatgtgtacctctttattcattattccat |
230979 |
T |
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| Q |
201 |
tggagttgatgataaaaactagaattataaacatttgatgttcccttgcacagctctttcgaacaaaaatgttcccttgcacagttgtttaaaatttaat |
300 |
Q |
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| T |
230978 |
tggagttgaagataaaaacaagaattatagacatttgatgttcccttgcacagctctttcgaacaaaaatgttaccttgcacagttgtttaaaatttaat |
230879 |
T |
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| Q |
301 |
ggattttttatttaagacttaacggaattgttaagtttgacgatattggcaacacaaaatttccagaacaggaggtccacaaatttgagcattaatcctt |
400 |
Q |
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||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230878 |
ggatttttttttaaagacttaacagaattgttaagtttgacgatattgacaacacaaaatttccagaacaggaggtccacaaatttgagcattaatcctt |
230779 |
T |
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| Q |
401 |
agtcaaataggaaacaaaattgaaatggtaaaacaatgattctaatctaaagactaattaaacaa |
465 |
Q |
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| T |
230778 |
agtcaaataggaaacaaaattgaaatggtaaaacagtgattctaatctaaagactaattaaacaa |
230714 |
T |
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