View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16477_low_10 (Length: 271)
Name: NF16477_low_10
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 4393157 - 4393071
Alignment:
| Q |
12 |
agagatgagagaagagttgatgtcatgctgccattggtgatgagtgttgcagggcttagacttaaacatgcttggccagtgtctatt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393157 |
agagatgagagaagagttgatgtcatgctgccattggtgatgagtgttgcagggcttagacttaaacatgcttggccagtgtctatt |
4393071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 4392993 - 4392913
Alignment:
| Q |
175 |
caaataaccaaatgagaaaacaatctagaagcttttctctcttgctttctgaaaccctcagaaccaacaaaaccttcttat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4392993 |
caaataaccaaatgagaaaacaatctagaagcttttctctcttgctttctgaaaccctcagaaccaacaaaaccttcttat |
4392913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University