View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16477_low_2 (Length: 452)
Name: NF16477_low_2
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 26417454 - 26417115
Alignment:
| Q |
16 |
cacagataaagtttgttatgtacaaaagcgaagatgtgttaattagaaacttaatcttgaaaaaactagaatatataattcattggtcatcacacacttc |
115 |
Q |
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| T |
26417454 |
cacagataaagtttgttatgtacaaaagcgaagatatgttaattagaaacttaatcttgaaaaaactagaatatataattcattggtcatcacacacttc |
26417355 |
T |
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| Q |
116 |
catttgaagggagggnnnnnnnn--tacgtttcaaagaaaaatataagcttgaatttcaatgtaaaccttggcaaaggtaaatatgtaaagacgatgctt |
213 |
Q |
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| T |
26417354 |
catttgaagggagggaaaaaaaaaatacgtttcaaagaaaaatataagcttgaatttcaatgtaaaccttggcaaaggtaaatatgcaaagacgatgctt |
26417255 |
T |
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| Q |
214 |
tcattctttaagactttccactaatgatgaaaaataaaatttgtatataaaatttgtgctaacctaattcaaccttgtcaaaaaatacagttgaagatgg |
313 |
Q |
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| T |
26417254 |
tcattctttaagactttccactaatgatgaaaaataaaatttgtatataaaatttgtgctaacctaattcaaccttgtcaaaaaatacagttgaagatgg |
26417155 |
T |
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| Q |
314 |
tagatataatttctcagcatcaagaaattacatatgccat |
353 |
Q |
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| T |
26417154 |
tagatataatttctcagcatcaagaaattacatatgccat |
26417115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 26417036 - 26416974
Alignment:
| Q |
381 |
tccttgtagatgttacccatgaatggaaaagctaacagtattttcttcactctttgcctttgc |
443 |
Q |
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| T |
26417036 |
tccttgtctatgtgacccatgaatgggaaagctaacagtattttcttcagtctttgcctttgc |
26416974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 36878657 - 36878592
Alignment:
| Q |
381 |
tccttgtagatgttacccatgaatggaaaagctaacagtat--tttcttcactctttgcctttgct |
444 |
Q |
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| T |
36878657 |
tccttgtagatgatacccataaattgaaaagctaacagtattctctcttcactctttacctttgct |
36878592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 36879842 - 36879794
Alignment:
| Q |
251 |
aatttgtatataaaatttgtgctaacctaattcaaccttgtcaaaaaat |
299 |
Q |
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| T |
36879842 |
aatttgtgtataaaacttgtgctaacctaattcaaccttgataaaaaat |
36879794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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