View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16477_low_4 (Length: 388)
Name: NF16477_low_4
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_low_4 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 38724991 - 38724860
Alignment:
| Q |
18 |
aattccttcgcagagccaatgaagatttcgccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcat |
117 |
Q |
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| T |
38724991 |
aattccttcgcagagccaatgaagatttcgccccaacgaacttcacttgcaaatgcaagcaaggacatgtatgttgcacttcatccttattcagttgcat |
38724892 |
T |
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| Q |
118 |
cgatcgatctattaatttgaaatgctatggtg |
149 |
Q |
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| T |
38724891 |
cgattgatctattaatttgaaatgctatggtg |
38724860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 38724748 - 38724687
Alignment:
| Q |
313 |
caaaaagatttacatttactaagagatgtaaatggatatcatggatgctaatagtatgacat |
374 |
Q |
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| T |
38724748 |
caaaaatatttacatttactcacggatgtaaatggatatcatggatgcagatagtatgacat |
38724687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 32675 - 32746
Alignment:
| Q |
47 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
118 |
Q |
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| T |
32675 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
32746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 34165854 - 34165925
Alignment:
| Q |
47 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
118 |
Q |
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| T |
34165854 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
34165925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 34215948 - 34216019
Alignment:
| Q |
47 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
118 |
Q |
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| T |
34215948 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
34216019 |
T |
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