View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16477_low_8 (Length: 295)
Name: NF16477_low_8
Description: NF16477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16477_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 8425134 - 8425397
Alignment:
| Q |
12 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8425134 |
acatcatctccgtgaagggaatcaaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctga |
8425233 |
T |
|
| Q |
112 |
tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425234 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt |
8425333 |
T |
|
| Q |
212 |
attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtg |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8425334 |
attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggagtgtg |
8425397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 30234221 - 30234406
Alignment:
| Q |
12 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga |
111 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
30234221 |
acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga |
30234320 |
T |
|
| Q |
112 |
tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
197 |
Q |
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| T |
30234321 |
tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag |
30234406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
| Q |
196 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30235004 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
30235049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 22476237 - 22475981
Alignment:
| Q |
12 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac |
107 |
Q |
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|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
22476237 |
acatcatctctgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaac |
22476138 |
T |
|
| Q |
108 |
ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg |
207 |
Q |
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||||||||| ||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| || |
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| T |
22476137 |
ctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccgg |
22476038 |
T |
|
| Q |
208 |
tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattgg |
264 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22476037 |
cgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattgg |
22475981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 26842255 - 26842378
Alignment:
| Q |
12 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaagaagggaaaac |
107 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |
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| T |
26842255 |
acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatac |
26842354 |
T |
|
| Q |
108 |
ctgatctcaggaagaaggttttgc |
131 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
26842355 |
ctgatctcaggaagaaggttttgc |
26842378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 26849095 - 26849175
Alignment:
| Q |
155 |
aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatg |
235 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
26849095 |
aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg |
26849175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 1530477 - 1530736
Alignment:
| Q |
12 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
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| T |
1530477 |
acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaac |
1530576 |
T |
|
| Q |
108 |
ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||||| || |
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| T |
1530577 |
ctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacgg |
1530676 |
T |
|
| Q |
208 |
tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
1530677 |
cattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaa |
1530736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 26797915 - 26797848
Alignment:
| Q |
207 |
gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtg |
275 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |
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|
| T |
26797915 |
gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtg |
26797848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
| Q |
56 |
ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca |
155 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || ||||||||||||| ||||||||| | |||||||| | || || | ||||||||| ||| | | |
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|
| T |
39327952 |
ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta |
39327853 |
T |
|
| Q |
156 |
agccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
197 |
Q |
| |
|
| || ||||||| |||||| ||||| |||||||||||||||| |
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|
| T |
39327852 |
aaccatggcgccgaaaggacggtgttttcatgtacttcgaag |
39327811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
| Q |
196 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
241 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
39327713 |
agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt |
39327668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
| Q |
196 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
241 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
39718826 |
agataatgctggtgttattgttaatcccaaaggagaaataaaaggt |
39718781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
| Q |
196 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29758696 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
29758741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
| Q |
196 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaag |
239 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
25153751 |
agataattctggtgttattgttaatcctaagggagaaatgaaag |
25153794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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