View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_high_4 (Length: 489)
Name: NF16478_high_4
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 1225919 - 1226374
Alignment:
| Q |
19 |
tgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaatatctcaaattgttctgaaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225919 |
tgcagtccacagttttagttaattgacaaatagagatgagactaatacgtaattgaggcgaaaaaagaacattattaatatctcaaattgttctgaaaat |
1226018 |
T |
|
| Q |
119 |
ttaattgaaccacaataatgagcaaccaaggtggttccattgggaaaagagacaaatattggttgaattttgtagagattagtaaagcaatacaaatgag |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
1226019 |
ttaatttaaccacaataatgagcaaccaaggtggttccattgggaaaagagacaaatattggttgaattttgtagagactagtaaagcaataaaaatgag |
1226118 |
T |
|
| Q |
219 |
ggaaggcatgatcactagcaccataatctaaaatccaagtagaaggggaggataacgtattaccagatttgttgatgttgaaaacgatgtgagtcttgag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
1226119 |
ggaaggcatgatcactagcaccataatctaaaatccaagtagaaggggaggataacgtattaccagatttgttgatgttggaaacgatgtgagtctggag |
1226218 |
T |
|
| Q |
319 |
gtcttatgtggattgcttatttgaagaagactcatgatgggatgacttgaggagattaatcaaatatttgtattcttctttggacaaggaaagattgttg |
418 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226219 |
gtcttatgtggattgcttttttgaagaagactcataatgggatgacttgaggagattaatcaaatatttgtattcttctttggacaaggaaagattgtta |
1226318 |
T |
|
| Q |
419 |
tcatgattttgttgcttaacactatgggttcttgattgttgggagttacctctgtg |
474 |
Q |
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| T |
1226319 |
tcatgattttgttgcttaacactgtgggttcttgattgttgggagttacctctgtg |
1226374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 19608495 - 19608948
Alignment:
| Q |
19 |
tgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaatatctcaaattgttctgaaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
19608495 |
tgcagtccacagttttagttaattgagaaatagagatgagactaatacgaaattgaggcaagaaaagaacattattaat--ctcaaattgttctgaaaat |
19608592 |
T |
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| Q |
119 |
ttaattgaaccacaataatgagcaaccaaggtggttccattgggaaaagagacaaatattggttgaattttgtagagattagtaaagcaatacaaatgag |
218 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||| |||| |||||||| |
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| T |
19608593 |
ttaattgaaccacaatactgagcaatcaaggtggttccatttggaaaagagacagatattggttgaattttgtaaagactagtaaaacaatgcaaatgag |
19608692 |
T |
|
| Q |
219 |
ggaaggcatgatcactagcaccataatctaaaatccaagtagaaggggaggataacgtattaccagatttgttgatgttgaaaacgatgtgagtcttgag |
318 |
Q |
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|| || ||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
19608693 |
ggcagacatgatcactagcaccagaatctaaaatccatgtagaaggggaaaataacatattaccagatttgttgatgttagaaaccatgtgagtcttgag |
19608792 |
T |
|
| Q |
319 |
gtcttatgtggattgcttatttgaagaagactcatgatgggatgacttgaggagattaatcaaatatttgtattcttctttggacaaggaaagattgttg |
418 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19608793 |
gtcttctgtcgattgcttatttgaagaagactcagaatgggatgacttgaggagattaatcagatatttgtattcttctttggacaaggaaagattgttg |
19608892 |
T |
|
| Q |
419 |
tcatgattttgttgcttaacactatgggttcttgattgttgggagttacctctgtg |
474 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||||||||||||||||||||||| |
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|
| T |
19608893 |
tcatgattatgttgctcaacactgttggttcttgattgttgggagttacctctgtg |
19608948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 37010621 - 37010168
Alignment:
| Q |
19 |
tgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaatatctcaaattgttctgaaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37010621 |
tgcagtccacagttttagttaattgagaaatagagatgagactaatacgaaattgaggcaagaaaagaacattattaat--ctcaaattgttctgaaaat |
37010524 |
T |
|
| Q |
119 |
ttaattgaaccacaataatgagcaaccaaggtggttccattgggaaaagagacaaatattggttgaattttgtagagattagtaaagcaatacaaatgag |
218 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || |||| |||| |||||||| |
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|
| T |
37010523 |
ttaattgaaccacaatactgagcaatcaaggtggttccatttggaaaagagacagatattggttgaattttgtaaagactaataaaacaatgcaaatgag |
37010424 |
T |
|
| Q |
219 |
ggaaggcatgatcactagcaccataatctaaaatccaagtagaaggggaggataacgtattaccagatttgttgatgttgaaaacgatgtgagtcttgag |
318 |
Q |
| |
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|| || ||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37010423 |
ggcagacatgatcactagcaccagaatctaaaatccatgtagaaggggaaaataacatattaccagatttgttgatgttagaaaccatgtgagtcttgag |
37010324 |
T |
|
| Q |
319 |
gtcttatgtggattgcttatttgaagaagactcatgatgggatgacttgaggagattaatcaaatatttgtattcttctttggacaaggaaagattgttg |
418 |
Q |
| |
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||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
37010323 |
gtcttctgtcgattgcttatttgaagaagactcagaatgggatgacttgaggagattaatcagatatttatattcttctttggacaaggaaagattgttg |
37010224 |
T |
|
| Q |
419 |
tcatgattttgttgcttaacactatgggttcttgattgttgggagttacctctgtg |
474 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
37010223 |
tcatgattatgttgctcaacactgttggttcttgattgttgggagttacctctgtg |
37010168 |
T |
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