View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16478_high_5 (Length: 480)
Name: NF16478_high_5
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_high_5 |
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| [»] scaffold0209 (6 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 464
Target Start/End: Complemental strand, 8803 - 8357
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtgt |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
8803 |
cataggtgcttttactgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgcattgctgatgttgcttctatgcacgttttgtgt |
8704 |
T |
|
| Q |
106 |
atagagctgaatccatggctgaatttatagcaactgaatccacggctgaatttagtggttaacggttagtcgttaatctgttgtgactgaatctgtgact |
205 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8703 |
atagagctgaatctgtggctgaatttatggcaactgaatccacggctgaatttagtggttaacggttagtcgttaatctgttgtgactgaat-------- |
8612 |
T |
|
| Q |
206 |
gaattttttgggctgatttagtaaccacatgttgagttcaaagaaagtatgggaaagctcggctaaaggattggtatagtataacttatttgtgagagaa |
305 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8611 |
----tttttgcgctgatttagtaaccacttgttgagttcaaagaaagtatgggaaagctcggctaaaggattggtatagtataacttatttgtgagagaa |
8516 |
T |
|
| Q |
306 |
actggattagggtgggataatgagaatgtaacattcaaatggtatgttgttttaagtattaagaattcaactacgaagtactaggtagttccacttgttg |
405 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8515 |
actggattagggtgggataatgtgaaggtaacattcaaatggtatgttgttttaagtattaagaattcaactatgaagtactaggtagttccacttgttg |
8416 |
T |
|
| Q |
406 |
taattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgta |
464 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8415 |
taattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgta |
8357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 464
Target Start/End: Complemental strand, 22257 - 21811
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtgt |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
22257 |
cataggtgcttttactgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgcattgctgatgttgcttctatgcacgttttgtgt |
22158 |
T |
|
| Q |
106 |
atagagctgaatccatggctgaatttatagcaactgaatccacggctgaatttagtggttaacggttagtcgttaatctgttgtgactgaatctgtgact |
205 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22157 |
atagagctgaatctgtggctgaatttatggcaactgaatccacggctgaatttagtggttaacggttagtcgttaatctgttgtgactgaat-------- |
22066 |
T |
|
| Q |
206 |
gaattttttgggctgatttagtaaccacatgttgagttcaaagaaagtatgggaaagctcggctaaaggattggtatagtataacttatttgtgagagaa |
305 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22065 |
----tttttgcgctgatttagtaaccacttgttgagttcaaagaaagtatgggaaagctcggctaaaggattggtatagtataacttatttgtgagagaa |
21970 |
T |
|
| Q |
306 |
actggattagggtgggataatgagaatgtaacattcaaatggtatgttgttttaagtattaagaattcaactacgaagtactaggtagttccacttgttg |
405 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21969 |
actggattagggtgggataatgtgaaggtaacattcaaatggtatgttgttttaagtattaagaattcaactatgaagtactaggtagttccacttgttg |
21870 |
T |
|
| Q |
406 |
taattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgta |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21869 |
taattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgta |
21811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 18063 - 17835
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtgt |
105 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
18063 |
cataagtgcttttactgtggtctgttttaatcttttgggagtttgccgcatatttcaatccatttgtatttctgatgttgcttctattcacgttttgtgt |
17964 |
T |
|
| Q |
106 |
atagagctgaatccatggctgaatttatagcaactgaatccacggctgaatttagtggttaacggttagtcgttaatctgttgtgactgaatctgtgact |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
17963 |
atagagctgaatccgtggctgaatttatagcgactgaatccatggatgaatttagtggttaactgttagtcgttaatctgttgtgactgaatccgtgact |
17864 |
T |
|
| Q |
206 |
gaattttttg-ggctgatttagtaaccac |
233 |
Q |
| |
|
|||||| ||| |||||||||||||||| |
|
|
| T |
17863 |
gaatttattgcaactgatttagtaaccac |
17835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 7908 - 7754
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatc-ttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtg |
104 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| | |||||||| |
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|
| T |
7908 |
catagatgcttttactgtggtctgttttttcccttttgggagggtgccgcatatttccagccatttgtatttctgttgttgcttctatgtaagttttgtg |
7809 |
T |
|
| Q |
105 |
tatagagctgaatccatggctgaatttatagcaactgaatccacggctgaattta |
159 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
7808 |
tatagagttgaatccgtggctgattttatagcgactgaatccgtggctgaattta |
7754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 21362 - 21208
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatc-ttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtg |
104 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| | |||||||| |
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|
| T |
21362 |
catagatgcttttactgtggtctgttttttcccttttgggagggtgccgcatatttccagccatttgtatttctgttgttgcttctatgtaagttttgtg |
21263 |
T |
|
| Q |
105 |
tatagagctgaatccatggctgaatttatagcaactgaatccacggctgaattta |
159 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
21262 |
tatagagttgaatccgtggctgattttatagcgactgaatccgtggctgaattta |
21208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 394 - 464
Target Start/End: Complemental strand, 17813 - 17743
Alignment:
| Q |
394 |
ttccacttgttgtaattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgta |
464 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17813 |
ttccacttgttgtaattgttcagattcaacttggtttagtactttagttcagagtttgtaccagttttgta |
17743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 161 - 377
Target Start/End: Complemental strand, 581849 - 581632
Alignment:
| Q |
161 |
tggttaacggttagtcgttaatctgttgtgactgaatctgtgactgaattttttggg-ctgatttagtaaccacatgttgagttcaaagaaagtatggga |
259 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||| ||||||| ||| | ||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
581849 |
tggttaactgttagtcgttaatctgttgtgactgtttccgtgaatgaatttattgtgactgatttagtaaccaatttttgagttcaaagaaagtatggga |
581750 |
T |
|
| Q |
260 |
aagctcggctaaaggattggtatagtataacttatttgtgagagaaactggattagggtgggataatgagaatgtaacattcaaatggtatgttgtttta |
359 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| | |
|
|
| T |
581749 |
aagctcagctaaaggattggtatggtagaacttatttgtgagagaaactggattagggtgggataatgtgaatgtaacacccaaatggtatgtcgtttca |
581650 |
T |
|
| Q |
360 |
agtattaagaattcaact |
377 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
581649 |
agtattaagaattcaact |
581632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 582020 - 581909
Alignment:
| Q |
6 |
cataggtgcttttaatgtggtctgttttaatcttttgggagtttgccgcatatttcaagccacttgtatttctgatgttgcttctatgcacgttttgtgt |
105 |
Q |
| |
|
||||| |||||||| |||||||||||| | ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
582020 |
catagatgcttttactgtggtctgtttaactcttttgggagggtgccgcatatttccagccatttgtatttctgatgttgcttcaatgcacgttttgtgt |
581921 |
T |
|
| Q |
106 |
atagagctgaat |
117 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
581920 |
atagggctgaat |
581909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 581576 - 581540
Alignment:
| Q |
428 |
tttagtactttagttcagagtttgtaccagttttgta |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581576 |
tttagtactttagttcagagtttgtaccagttttgta |
581540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 19645503 - 19645542
Alignment:
| Q |
284 |
gtataacttatttgtgagagaaactggattagggtgggat |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19645503 |
gtataacttatttgggagagaaactggattagggtgggat |
19645542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 581916 - 581865
Alignment:
| Q |
122 |
ggctgaatttatagcaactgaatccacggctgaatttagtggttaacggtta |
173 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
581916 |
ggctgaatttatagcgactgaatctgtggctgaatttagtggttaactgtta |
581865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 22807272 - 22807311
Alignment:
| Q |
284 |
gtataacttatttgtgagagaaactggattagggtgggat |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22807272 |
gtataacttatttgggagagaaactggattagggtgggat |
22807311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 22696060 - 22696099
Alignment:
| Q |
284 |
gtataacttatttgtgagagaaactggattagggtgggat |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22696060 |
gtataacttatttgggagagaaactggattagggtgggat |
22696099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 4343399 - 4343438
Alignment:
| Q |
284 |
gtataacttatttgtgagagaaactggattagggtgggat |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4343399 |
gtataacttatttgggagagaaactggattagggtgggat |
4343438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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