View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_high_6 (Length: 449)
Name: NF16478_high_6
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 431
Target Start/End: Complemental strand, 3262102 - 3261698
Alignment:
| Q |
28 |
tctcaccataaatgttaaaaattgtgaaaacttataatctaagtttattggttcaaatgcatgagtggatgctacaaattttccttttacatattttctc |
127 |
Q |
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| T |
3262102 |
tctcaccataaatgttaaaaattgtgaaaacttataatctaagtttattggttcaaatgcatgagtggatgctacaaattttccttttacatattttctc |
3262003 |
T |
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| Q |
128 |
ataccttattttatgaaaattacatttgatccaagaggaattgatgatgggttcacactatttccgccatcaccaactttcaagcaatgggatcctagcg |
227 |
Q |
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| T |
3262002 |
ataccttattttatgaaaattacatttgatccaagaggaattgatgatgggttcacactatttccgccattaccaactttcaagcaatgggatcctagcg |
3261903 |
T |
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| Q |
228 |
gaaaatttcgtgaagcaagtgtcacttggcctttgtccttc-aagctatggcgatgacaccaatgaagggaaatactatctaacattatcttgtgtttgt |
326 |
Q |
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| T |
3261902 |
gaaaatttcgtgaagcaagtgtcacttggcctttgtccttcaaagctatggcgatgacaccaatgaagggaaatactatctaacattatcttgtgtttgt |
3261803 |
T |
|
| Q |
327 |
tctatcttaattctttttggttgtaattggnnnnnnnnnnaatatttttgaaaactttttccttcttgataaacaaaaaggattgtgccatttgagtgat |
426 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3261802 |
tctatcttaattctttttggttgtaattggtattttttttaatatttttgcaaactttttccttcttgataaacaaaaaggattgtgccatttgagtgat |
3261703 |
T |
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| Q |
427 |
aaatc |
431 |
Q |
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||||| |
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| T |
3261702 |
aaatc |
3261698 |
T |
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