View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16478_high_7 (Length: 424)

Name: NF16478_high_7
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16478_high_7
NF16478_high_7
[»] chr4 (27 HSPs)
chr4 (242-389)||(11960667-11960817)
chr4 (1-96)||(37711141-37711236)
chr4 (1-96)||(54935070-54935161)
chr4 (1-96)||(1968510-1968600)
chr4 (1-53)||(27735786-27735838)
chr4 (1-96)||(31348472-31348562)
chr4 (1-96)||(26166940-26167030)
chr4 (1-42)||(35248738-35248779)
chr4 (1-50)||(49735619-49735668)
chr4 (4-96)||(29798291-29798378)
chr4 (1-97)||(46007852-46007943)
chr4 (1-60)||(47433859-47433919)
chr4 (1-97)||(5730981-5731073)
chr4 (22-96)||(54935241-54935310)
chr4 (1-54)||(54320474-54320527)
chr4 (1-37)||(45741947-45741983)
chr4 (1-96)||(2247953-2248042)
chr4 (3-42)||(24565497-24565536)
chr4 (8-54)||(2247843-2247889)
chr4 (15-53)||(6938322-6938360)
chr4 (6-52)||(27735901-27735947)
chr4 (22-96)||(49735471-49735540)
chr4 (1-42)||(41174397-41174438)
chr4 (1-37)||(2917114-2917150)
chr4 (1-49)||(6891405-6891453)
chr4 (1-33)||(36151637-36151669)
chr4 (10-50)||(45132655-45132695)
[»] chr1 (25 HSPs)
chr1 (1-96)||(26324017-26324112)
chr1 (1-96)||(35349613-35349703)
chr1 (1-54)||(10391912-10391965)
chr1 (1-97)||(38510045-38510136)
chr1 (5-92)||(2859087-2859169)
chr1 (1-96)||(12234013-12234103)
chr1 (1-96)||(30010335-30010425)
chr1 (1-96)||(32951469-32951559)
chr1 (1-59)||(50744432-50744490)
chr1 (1-95)||(51597672-51597761)
chr1 (6-52)||(40095090-40095136)
chr1 (1-58)||(6563614-6563670)
chr1 (1-54)||(7444518-7444571)
chr1 (6-59)||(8529834-8529887)
chr1 (3-96)||(41498407-41498495)
chr1 (6-54)||(41676437-41676485)
chr1 (1-59)||(2470886-2470944)
chr1 (22-96)||(12234182-12234251)
chr1 (22-60)||(38509928-38509966)
chr1 (22-54)||(35349504-35349536)
chr1 (22-54)||(40094973-40095005)
chr1 (25-53)||(43552037-43552065)
chr1 (1-49)||(45585836-45585884)
chr1 (1-53)||(49946629-49946681)
chr1 (241-305)||(50135026-50135090)
[»] chr7 (23 HSPs)
chr7 (1-96)||(39856016-39856106)
chr7 (1-60)||(41497108-41497167)
chr7 (1-97)||(33655259-33655350)
chr7 (1-96)||(25887195-25887285)
chr7 (1-96)||(1051649-1051739)
chr7 (1-54)||(43230276-43230329)
chr7 (1-96)||(13771097-13771187)
chr7 (1-60)||(47390889-47390948)
chr7 (6-96)||(31571626-31571711)
chr7 (5-59)||(37417788-37417842)
chr7 (1-65)||(34228469-34228534)
chr7 (1-53)||(23029485-23029537)
chr7 (6-59)||(34235164-34235219)
chr7 (6-93)||(41008188-41008270)
chr7 (1-59)||(17852906-17852964)
chr7 (7-60)||(40196566-40196619)
chr7 (1-50)||(40196683-40196732)
chr7 (1-49)||(24970316-24970364)
chr7 (1-52)||(42306376-42306427)
chr7 (1-59)||(10315648-10315706)
chr7 (55-96)||(28074106-28074147)
chr7 (22-54)||(33655148-33655180)
chr7 (314-393)||(45843043-45843123)
[»] chr6 (26 HSPs)
chr6 (160-243)||(33040656-33040739)
chr6 (1-100)||(19278189-19278282)
chr6 (6-96)||(9719186-9719271)
chr6 (22-96)||(9721141-9721210)
chr6 (1-49)||(33235996-33236044)
chr6 (7-96)||(10818232-10818316)
chr6 (1-73)||(9298637-9298709)
chr6 (1-97)||(30487456-30487547)
chr6 (1-97)||(31849112-31849203)
chr6 (22-96)||(9719034-9719103)
chr6 (1-54)||(2893670-2893723)
chr6 (1-34)||(5585453-5585486)
chr6 (15-96)||(14515476-14515552)
chr6 (1-48)||(2892754-2892801)
chr6 (6-97)||(4097669-4097755)
chr6 (6-37)||(10348955-10348986)
chr6 (1-96)||(12811131-12811221)
chr6 (7-57)||(666004-666054)
chr6 (17-59)||(1300787-1300829)
chr6 (15-57)||(2893011-2893053)
chr6 (6-96)||(9721293-9721378)
chr6 (22-60)||(10818388-10818426)
chr6 (1-59)||(16738147-16738205)
chr6 (1-53)||(6034223-6034275)
chr6 (23-59)||(21606879-21606915)
chr6 (56-96)||(23090998-23091038)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-97)||(1174-1265)
[»] chr5 (21 HSPs)
chr5 (268-393)||(39984476-39984606)
chr5 (1-96)||(13634714-13634804)
chr5 (1-65)||(26414922-26414986)
chr5 (1-96)||(16938482-16938572)
chr5 (1-69)||(7544161-7544229)
chr5 (1-59)||(9856915-9856973)
chr5 (1-63)||(20147027-20147088)
chr5 (3-95)||(2550505-2550592)
chr5 (6-96)||(1657969-1658054)
chr5 (22-96)||(14245218-14245287)
chr5 (1-96)||(40815300-40815390)
chr5 (6-54)||(4373722-4373770)
chr5 (1-49)||(11419312-11419360)
chr5 (1-37)||(22022907-22022943)
chr5 (1-37)||(42681510-42681546)
chr5 (6-53)||(28279633-28279680)
chr5 (58-96)||(8551621-8551659)
chr5 (56-98)||(12600703-12600745)
chr5 (1-59)||(36363067-36363125)
chr5 (6-48)||(39966108-39966150)
chr5 (1-54)||(11756917-11756970)
[»] chr3 (23 HSPs)
chr3 (1-65)||(25655123-25655187)
chr3 (1-60)||(24560251-24560310)
chr3 (1-52)||(30200242-30200293)
chr3 (5-96)||(41110476-41110562)
chr3 (2-60)||(28582661-28582719)
chr3 (1-54)||(651771-651824)
chr3 (1-65)||(220548-220612)
chr3 (1-93)||(21773788-21773875)
chr3 (1-60)||(2387911-2387970)
chr3 (1-97)||(18654751-18654843)
chr3 (19-96)||(6803370-6803442)
chr3 (6-59)||(37102305-37102358)
chr3 (1-37)||(10748448-10748484)
chr3 (1-49)||(46204931-46204979)
chr3 (12-63)||(9312636-9312687)
chr3 (1-48)||(14898022-14898069)
chr3 (1-60)||(27542082-27542141)
chr3 (5-59)||(46556178-46556232)
chr3 (22-59)||(30200123-30200160)
chr3 (22-59)||(37102184-37102221)
chr3 (23-60)||(52474088-52474125)
chr3 (56-96)||(42772047-42772087)
chr3 (1-49)||(54574512-54574560)
[»] chr8 (26 HSPs)
chr8 (1-60)||(7979174-7979233)
chr8 (1-63)||(7503105-7503167)
chr8 (1-54)||(16652989-16653042)
chr8 (1-65)||(11575557-11575621)
chr8 (2-53)||(1281184-1281235)
chr8 (1-60)||(31543223-31543282)
chr8 (1-54)||(37032419-37032472)
chr8 (1-54)||(42650487-42650540)
chr8 (1-56)||(11033455-11033510)
chr8 (1-52)||(37923229-37923280)
chr8 (1-59)||(11785561-11785619)
chr8 (8-49)||(40990342-40990383)
chr8 (1-69)||(1027000-1027067)
chr8 (1-49)||(3727006-3727054)
chr8 (1-37)||(6315119-6315155)
chr8 (1-53)||(41103657-41103709)
chr8 (1-96)||(2248455-2248545)
chr8 (33-96)||(4247699-4247761)
chr8 (1-96)||(9718630-9718720)
chr8 (3-57)||(29358492-29358547)
chr8 (1-96)||(30479868-30479958)
chr8 (22-60)||(3726897-3726935)
chr8 (1-43)||(13405027-13405069)
chr8 (23-60)||(31543106-31543143)
chr8 (3-80)||(31738442-31738514)
chr8 (1-54)||(33922560-33922613)
[»] chr2 (14 HSPs)
chr2 (1-96)||(36347692-36347782)
chr2 (1-96)||(35736178-35736268)
chr2 (1-59)||(19566972-19567030)
chr2 (5-59)||(23748130-23748184)
chr2 (1-59)||(39821704-39821762)
chr2 (1-94)||(8427022-8427110)
chr2 (3-60)||(15224847-15224904)
chr2 (1-96)||(36046353-36046442)
chr2 (1-37)||(9591986-9592022)
chr2 (1-49)||(28262594-28262642)
chr2 (5-96)||(9426988-9427074)
chr2 (1-48)||(39732880-39732926)
chr2 (22-96)||(36046207-36046276)
chr2 (6-63)||(12541796-12541853)
[»] scaffold0067 (2 HSPs)
scaffold0067 (1-60)||(39341-39400)
scaffold0067 (22-96)||(39189-39259)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-65)||(6613-6677)
[»] scaffold0341 (1 HSPs)
scaffold0341 (1-58)||(18807-18863)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-54)||(16447-16500)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-49)||(15995-16043)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 242 - 389
Target Start/End: Complemental strand, 11960817 - 11960667
Alignment:
Q  242 aagagaaaattgcatttaccttccttgaggttttacttaatgacactcacaccccctttagtttgnnnnnnncatttacctcccctcgtgtttactttgt 341  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||| | |||||||| |||    
T  11960817 aagagaaaattacatttacctcccttgaggttttacttaatgacactcacaccccctctagttttaaaaaaacatttacctccccgcatgtttactctgt 11960718  T
Q  342 tagtcac---cgttaccaaactttcaagcttccttccatggcacctctaaa 389  Q
    |||||||   |||||||||||||||||| ||||||||||||||||||||||    
T  11960717 tagtcaccatcgttaccaaactttcaaggttccttccatggcacctctaaa 11960667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 37711236 - 37711141
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||| || ||||||||| ||||||  ||||||||||||||    
T  37711236 tttagagaaacatgttatatagtccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccttcccctcctaaaccctcaatccaaacacac 37711141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 54935161 - 54935070
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    |||||| ||||||||| ||||||  ||||||||||||||    
T  54935161 tttagaaaaacatgttatatagttcgtaatttaaaaaagaaaagtaaaccctc----cccctcccttcccctcctaaaccctcaatccaaacacac 54935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1968510 - 1968600
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||     |||| ||||| ||||||||| ||||||  ||||||||||||||    
T  1968510 tttagaaaaacatattatatagtccgtaatttaaaaatgaaaattaaa-----ctcttccctcccttcccctcctaaaccctcaatccaaacacac 1968600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27735838 - 27735786
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  27735838 tttaaaaaaacatgttatatagtccgtaatttaaaaatgaaaattaaaccctc 27735786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31348472 - 31348562
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||     |||||||| |||||   ||||||||||||||    
T  31348472 tttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaaccctcccctccc-----ttcccctcctaaactctcaatccaaacacac 31348562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26167030 - 26166940
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||| ||||||||||||||||| |||||||||||| |||||| |||     ||||||||||  |||||||| ||||||  ||||||||||||||    
T  26167030 tttagagaaacatgttatatagtctgtaatttaaaaaagaaaaacaaa-----ctctcccctccattcccctcctaaaccctcaatccaaacacac 26166940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35248779 - 35248738
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaa 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  35248779 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaa 35248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49735619 - 49735668
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaacc 50  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  49735619 tttagaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaacc 49735668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 29798378 - 29798291
Alignment:
Q  4 agaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||| ||||||||||||  |||| ||||     || ||| ||||||||||||| ||||||  ||||||||||||||    
T  29798378 agaaaaacatgttatatagtctgtaatttaaaaaataaaagtaaa-----ctatcctctctcttcccctcctaaaccatcaatccaaacacac 29798291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46007852 - 46007943
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||| ||||||| ||||||||||| | |||||||||| ||||| ||||||     |||||||| ||||||||| ||||||  |||||||||||||||    
T  46007852 tttacaaaaacaagttatatagtctgcaatttaaaaaagaaaagtaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacact 46007943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47433859 - 47433919
Alignment:
Q  1 tttagaaaaacatgttat-atagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||| ||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||    
T  47433859 tttaaaaaaacatgttattatagtctgtaatttaaaaaagaaaagtaaaccctcctctccc 47433919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5730981 - 5731073
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||||| ||||||||||||||||||||||||||||    |||| |||| |   |||||||||| ||||||||| ||||||  |||| ||||||||||    
T  5730981 tttagagaaacatgttatatagtccgtaatttaaa----aaaagtaaaacaaactctcccctcccttcccctcctaaaccctcaattcaaacacact 5731073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 54935241 - 54935310
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||||||||| |||||     |||||||| ||||||  | ||||||||||||    
T  54935241 gtccgtaatttaaaaatgaaaaataaaccctcccctccc-----ttcccctcctaaaccctccatccaaacacac 54935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 54320527 - 54320474
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||||||||| ||||||||| |||||||||||| |||||  |||||||||    
T  54320527 tttagaaaaacatgatatatagtcggtaatttaaaaaagaaaatcaaaccctcc 54320474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45741983 - 45741947
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45741983 tttagaaaaacaagttatatagtccgtaatttaaaaa 45741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2247953 - 2248042
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||| || |||||||||||| ||||| ||||     ||||||| || |||| |||| ||||||  ||||||||||||||    
T  2247953 tttagaaaaacatgttatata-tctgtaatttaaaaaagaaaagtaaa-----ctctcccttcacttctcctcctaaaccctcaatccaaacacac 2248042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 24565497 - 24565536
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaa 42  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24565497 tagaaaaacatgttatatagcccgtaatttaaaaaagaaa 24565536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2247889 - 2247843
Alignment:
Q  8 aaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||| |||||  |||||||||||||||||||||||| ||||||||    
T  2247889 aaacattttataatgtccgtaatttaaaaatgaaaaatgaaccctcc 2247843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 6938360 - 6938322
Alignment:
Q  15 ttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  6938360 ttatatagtccgtaatttaaaaaggaaaaataaatcctc 6938322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 27735901 - 27735947
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccct 52  Q
    |||||||| |||||  |||||||||||||||||||||||| ||||||    
T  27735901 aaaaacattttatagtgtccgtaatttaaaaatgaaaaatgaaccct 27735947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 49735540 - 49735471
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||| | ||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  49735540 gtccgtaatttaaaaatgaaaagtgaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 49735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41174438 - 41174397
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaa 42  Q
    |||||||||||||| |||||||||| ||||||||||| ||||    
T  41174438 tttagaaaaacatgctatatagtccctaatttaaaaaagaaa 41174397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2917114 - 2917150
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  2917114 tttagaaaatcatgttatatagtccggaatttaaaaa 2917150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6891453 - 6891405
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||||||||||||| |  ||| |||||||| |||||||||||    
T  6891453 tttagaaaaacatgttatataatttgtattttaaaaaagaaaaataaac 6891405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36151669 - 36151637
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaattta 33  Q
    |||||||||||||||||||||||| ||||||||    
T  36151669 tttagaaaaacatgttatatagtctgtaattta 36151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 45132655 - 45132695
Alignment:
Q  10 acatgttatatagtccgtaatttaaaaatgaaaaataaacc 50  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  45132655 acatattatatagtccgtaatttaaaaaagaaaagtaaacc 45132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26324112 - 26324017
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||||  |||||||||||| |||||  ||||||||| |||||||| ||||||||| ||||||  ||||||||||||||    
T  26324112 tttagaaaaacatgttatatagttggtaatttaaaaaagaaaatcaaaccctcccctcccctcccttcccctcctaaaccctcaatccaaacacac 26324017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 35349613 - 35349703
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||     |||||||| ||||||||||||||||   |||||||||||||    
T  35349613 tttagaaaaaaatgttatatagtccgtaatttaaaaacgaaaagtaaacc-----ctcccctcccttcccctcataaacccttaatccaaacacac 35349703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10391965 - 10391912
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  10391965 tttagaaaaacatgtaatatagtccgtaatttaaaaatgaaaagtaaaccctcc 10391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38510045 - 38510136
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||     |||||||| ||||||||| ||||||   ||||||||||||||    
T  38510045 tttagaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaacc-----ctcccctcccttcccctcctaaacccttaatccaaacacact 38510136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 2859087 - 2859169
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaac 92  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||     |||||||| ||||||||| ||||||| ||||||||||    
T  2859087 gaaaaacatgttatatagtccgtaatttaaaaaataaaagtaaacc-----ctcccctcccttcccctcctaaaccttcaatccaaac 2859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12234103 - 12234013
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||| ||     || ||||| ||||||||| ||||||  ||||||||||||||    
T  12234103 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaattaagcc-----ctaccctcccttcccctcctaaaccctcaatccaaacacac 12234013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 30010425 - 30010335
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||| |     |||||||| ||||||||| ||||||  ||||||||||||||    
T  30010425 tttagaaaaacatgttatatagtccgtaatttaaacaagaaaagtaaatc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 30010335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 32951469 - 32951559
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||     ||||||||| ||||| ||| |||||   ||||||||||||||    
T  32951469 tttagaaaaacatgttctatagtccgtaatttaaaaacgaaaagtaaac-----tctcccctcccttcctctcctaaactctcaatccaaacacac 32951559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50744432 - 50744490
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||| |||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  50744432 tttagagaaacctgttatatagtccgtaatttaaaaaagaaaaacaaaccctcccctcc 50744490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 51597761 - 51597672
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacaca 95  Q
    |||| |||||||||||||||||||||| ||||||||| ||||| ||||     |||||||||| |||||  |||||||||  |||||||||||||    
T  51597761 tttaaaaaaacatgttatatagtccgtgatttaaaaaagaaaagtaaa-----ctctcccctcccttcctttcataaaccctcaatccaaacaca 51597672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 40095090 - 40095136
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccct 52  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  40095090 aaaaacatgttatatagtctgtaatttaaaaacgaaaagtaaaccct 40095136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6563670 - 6563614
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctc 58  Q
    |||||||| ||||||||||||||| || ||||||||| | ||||||||||||||||||    
T  6563670 tttagaaagacatgttatatagtctgtcatttaaaaaag-aaaataaaccctcctctc 6563614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7444571 - 7444518
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    ||||||||| ||||| |||| |||||||||||||||| ||||| ||||||||||    
T  7444571 tttagaaaatcatgtcatatggtccgtaatttaaaaaagaaaagtaaaccctcc 7444518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 8529887 - 8529834
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||  |||||||||||| ||||| |||||||||| ||||    
T  8529887 aaaaacatgttatatagtttgtaatttaaaaaagaaaagtaaaccctcccctcc 8529834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 41498495 - 41498407
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||| ||||||| ||||| | ||||||||||| ||||| ||||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  41498495 tagaaaatcatgttaaatagttcataatttaaaaacgaaaagtaaacc-----ctcccctcacttcccctcctaaaccctcaatccaaacacac 41498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 41676437 - 41676485
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  41676437 aaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcc 41676485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2470886 - 2470944
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||||   ||||||||||| ||||| |||||| ||| ||||    
T  2470886 tttagaaaaacatgttatatagttgataatttaaaaaagaaaagtaaaccttcccctcc 2470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 12234182 - 12234251
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||| |||||||||| |||||     |||||||| ||||||  | ||||||||||||    
T  12234182 gtccgtaatttaaaaatgaaaactaaaccctcccctccc-----ttcccctcctaaaccctccatccaaacacac 12234251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 38509966 - 38509928
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  38509966 gtccgtaatttaaaaatgaaaagtgaaccctcctctccc 38509928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 35349536 - 35349504
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||||||||||||||||| ||||||||||    
T  35349536 gtccgtaatttaaaaatgaaaagtaaaccctcc 35349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 40095005 - 40094973
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||||||||||||||||| ||||||||||    
T  40095005 gtccgtaatttaaaaatgaaaagtaaaccctcc 40094973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 43552065 - 43552037
Alignment:
Q  25 cgtaatttaaaaatgaaaaataaaccctc 53  Q
    |||||||||||||||||||||||||||||    
T  43552065 cgtaatttaaaaatgaaaaataaaccctc 43552037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45585836 - 45585884
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    |||| ||||||||||||||||||||||||||| || | ||||| |||||    
T  45585836 tttaaaaaaacatgttatatagtccgtaattttaagaggaaaagtaaac 45585884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49946681 - 49946629
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    |||| ||||| || |||||  ||||||||||||||||||| ||||||||||||    
T  49946681 tttaaaaaaatattttatagtgtccgtaatttaaaaatgacaaataaaccctc 49946629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 50135026 - 50135090
Alignment:
Q  241 aaagagaaaattgcatttaccttccttgaggttttacttaatgacactcacaccccctttagttt 305  Q
    |||||||||| | ||||||||| |||||||||||   | || |||||||||||||||| ||||||    
T  50135026 aaagagaaaactacatttacctcccttgaggtttgcttaaaagacactcacaccccctctagttt 50135090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39856016 - 39856106
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  39856016 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 39856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41497108 - 41497167
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||    
T  41497108 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccctccc 41497167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33655259 - 33655350
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||||||||||||||||||||| || ||||||||||| ||||| |||||||||      |||||||||||||| ||||||  |||||||||||||||    
T  33655259 tttagaaaaacatgttatatagcccataatttaaaaaagaaaagtaaaccctcg-----cctctcttcccctcctaaaccctcaatccaaacacact 33655350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 25887285 - 25887195
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||| ||| |     |||||||| ||||||||||||||||  ||||||||||||||    
T  25887285 tttagaaaaacatgttatatagtccgtgatttataaaagaaaaacaaatc-----ctcccctcccttcccctcataaaccctcaatccaaacacac 25887195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1051649 - 1051739
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||   ||||||  |||| ||||||||| ||||||  ||||||||||||||    
T  1051649 tttagaaaaacaggttatatagttcgtaatttaaaaaagaaaaataaa---tcctct--cctcccttcccctcctaaaccctcaatccaaacacac 1051739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43230329 - 43230276
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  43230329 tttagaaaaacatgttatataatccgtaatttaaaaaagaaaagtaaaccctcc 43230276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13771097 - 13771187
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||     ||||| |||| ||||||||| ||||||  ||||| ||||||||    
T  13771097 tttaaaaaaacatgttatatagtccgtaatttaaaaacgaaaagtaaa-----ctctcacctcccttcccctcctaaaccctcaatctaaacacac 13771187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47390948 - 47390889
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| |||||    
T  47390948 tttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaaaccctccactccc 47390889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 31571626 - 31571711
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| |||||||||| |||||||||||||||| ||||| ||||     |||||||||| ||||||||| ||||||  ||||||||||||||    
T  31571626 aaaagcatgttatatggtccgtaatttaaaaaagaaaagtaaa-----ctctcccctcgcttcccctcctaaaccctcaatccaaacacac 31571711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 37417788 - 37417842
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||    
T  37417788 gaaaaacatgttatatagtccgttatttaaaaatgaaaagtaaaccatcccctcc 37417842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34228469 - 34228534
Alignment:
Q  1 tttagaaaaacatgttatatag-tccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    |||||||||||||||||||||| |||||||||| |||||||||| |||| ||||| ||||| ||||    
T  34228469 tttagaaaaacatgttatatagttccgtaattttaaaatgaaaagtaaatcctcccctcccttctc 34228534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23029485 - 23029537
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| |||||||||    
T  23029485 tttagaaaaacatgttatatagtctataatttaaaaaagaaaagtaaaccctc 23029537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 34235164 - 34235219
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataa--accctcctctcc 59  Q
    |||||||||||||||| ||||||||||||||||||||| |||  ||||||||||||    
T  34235164 aaaaacatgttatataatccgtaatttaaaaatgaaaagtaaacaccctcctctcc 34235219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 41008270 - 41008188
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaaca 93  Q
    |||||||||||||||||||||||||||||||| |||||| |||      ||||||||| |||||||||  |||||  |||||||||||    
T  41008270 aaaaacatgttatatagtccgtaatttaaaaaagaaaaacaaa-----ttctcccctcccttcccctctcaaaccctcaatccaaaca 41008188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17852964 - 17852906
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||| || ||||||||||||||| ||||| ||| |||||| ||||    
T  17852964 tttagaaaaacatgttatttaatccgtaatttaaaaaagaaaagtaatccctcccctcc 17852906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 40196619 - 40196566
Alignment:
Q  7 aaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||| |||||  |||||||||| ||||||||||| ||||||||||||||||    
T  40196619 aaaacattttatagtgtccgtaattcaaaaatgaaaagtaaaccctcctctccc 40196566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40196683 - 40196732
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaacc 50  Q
    ||||||||||||||||||||| |||||||||||||||  |||| ||||||    
T  40196683 tttagaaaaacatgttatatattccgtaatttaaaaacaaaaagtaaacc 40196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24970316 - 24970364
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  24970316 tttagaaaaacatgttatataatccataatttaaaaaagaaaaacaaac 24970364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42306427 - 42306376
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccct 52  Q
    |||||||| ||||||||||||||| |||||||||||| |||||  |||||||    
T  42306427 tttagaaatacatgttatatagtcggtaatttaaaaaagaaaatcaaaccct 42306376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10315706 - 10315648
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||| ||||||||||||| | |||||||||| ||||| |||| ||||| ||||    
T  10315706 tttagaaaaatatgttatatagtctgaaatttaaaaaagaaaagtaaatcctcccctcc 10315648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 28074147 - 28074106
Alignment:
Q  55 tctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  28074147 tctcccctcccttcccctcctaaaccttcaatccaaacacac 28074106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 33655180 - 33655148
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||||||||||||||||| ||||||||||    
T  33655180 gtccgtaatttaaaaatgaaaagtaaaccctcc 33655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 393
Target Start/End: Original strand, 45843043 - 45843123
Alignment:
Q  314 catttacctcccctcgtgtttactttgttagtcaccgttaccaaactttcaagcttccttccatgg-cacctctaaaattg 393  Q
    |||| |||||| ||| |||||||| |||| || ||||||||||||| ||| | | ||||||||||| ||||| ||||||||    
T  45843043 cattcacctccactcatgtttactatgtttgtgaccgttaccaaacattccaacatccttccatggccacctttaaaattg 45843123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 33040739 - 33040656
Alignment:
Q  160 tagtctttaacacagtatgactttcctatttacattattgtttgagttggcatgaggaagagataagtttgatcgaaaataaaa 243  Q
    |||||||||||| || ||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||| |||||    
T  33040739 tagtctttaacatagcatgtctttcctatttacattattgtttgaattgatatgaggaagagataagtttgatggaaactaaaa 33040656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19278189 - 19278282
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacacttaa 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||     |||||||| ||||||||| |||||   ||||||||||||||||||    
T  19278189 tttagaaaaacatgttatatagtccgtaatttaaaaaag-aaaataaacc-----ctcccctcccttcccctcctaaactctcaatccaaacacacttaa 19278282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 9719186 - 9719271
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| |||||||||||||||| |||||||||| ||||| ||||||| ||     |||||||||||||||||||||  ||||||||||||||    
T  9719186 aaaagcatgttatatagtccggaatttaaaaaagaaaattaaacccacc-----cctctcttcccctcataaaccctcaatccaaacacac 9719271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 9721210 - 9721141
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||||||||||     |||||||| ||||||||| ||||||| ||||||||||||||    
T  9721210 gtccgtaatttaaaaatgaaaaataaacc-----ctcccctcccttcccctcctaaaccttcaatccaaacacac 9721141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33236044 - 33235996
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  33236044 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaac 33235996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 10818316 - 10818232
Alignment:
Q  7 aaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||| |||||||||||||||| ||||||||||     |  ||||||| ||||||||| ||||||  ||||||||||||||    
T  10818316 aaaacatgttatattgtccgtaatttaaaaaagaaaaataaa-----caatcccctcccttcccctcctaaaccctcaatccaaacacac 10818232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9298637 - 9298709
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctc 73  Q
    |||| |||||||| | |||  ||||||||||||||| |||||| |||||||||| |||||||| |||||||||    
T  9298637 tttaaaaaaacatttcataatgtccgtaatttaaaattgaaaagtaaaccctcccctcccctcccttcccctc 9298709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30487456 - 30487547
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||| ||||||||||||||||||||||| ||||||||  |||| |||||||||| ||||     ||||||||| ||||||  ||||| |||||||||    
T  30487456 tttataaaaacatgttatatagtccgtagtttaaaaaataaaactaaaccctccactcc-----cttcccctcctaaaccctcaatcgaaacacact 30487547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31849203 - 31849112
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||||||||| ||||||||||||| ||| |||||||| ||||| ||||||     |||||||| ||||||||| ||||||  |||||| ||||||||    
T  31849203 tttagaaaaatatgttatatagtctgtagtttaaaaaagaaaactaaacc-----ctcccctcccttcccctcttaaaccctcaatcctaacacact 31849112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 9719103 - 9719034
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||| |     |||||||| ||||||||| ||||||  ||||||||||||||    
T  9719103 gtccgtaatttaaaaatgaaaaataaatc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 9719034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2893723 - 2893670
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| ||||| ||||    
T  2893723 tttagaaaaacatgttatatagtctgtagtttaaaaacgaaaagtaaactctcc 2893670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5585453 - 5585486
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5585453 tttagaaaaacatgttatatagtccgtaatttaa 5585486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 14515552 - 14515476
Alignment:
Q  15 ttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| |||||||||||||||||| |||||| |||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  14515552 ttatctagtccgtaatttaaaaaagaaaaacaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 14515476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2892754 - 2892801
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaa 48  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| ||||    
T  2892754 tttagaaaaacgtgttatatagtccgtagtttaaaaaagaaaagtaaa 2892801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 4097669 - 4097755
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    ||||| ||||||||| |||||||||||||||| ||||| | ||||     || ||||| ||||||||| ||||||  |||||||||||||||    
T  4097669 aaaaaaatgttatattgtccgtaatttaaaaaagaaaagtgaacc-----cttccctcccttcccctcttaaaccctcaatccaaacacact 4097755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 10348955 - 10348986
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||||||||||||||||||||||||||    
T  10348955 aaaaacatgttatatagtccgtaatttaaaaa 10348986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 12811131 - 12811221
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||| ||||||||||  ||||||||| | ||||| ||| ||     ||||||||||||||| || ||||||  ||||||||||||||    
T  12811131 tttagaaaaacatattatatagtctctaatttaaagaagaaaagtaatcc-----ctcccctctcttcccatcctaaaccctcaatccaaacacac 12811221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 666004 - 666054
Alignment:
Q  7 aaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctct 57  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||| |||||||    
T  666004 aaaacatgttgtatagtctgtagtttaaaaaagaaaaataaactctcctct 666054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 1300787 - 1300829
Alignment:
Q  17 atatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||| |||||||||||||||||||||| |||||||||| ||||    
T  1300787 atattgtccgtaatttaaaaatgaaaagtaaaccctcccctcc 1300829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 2893011 - 2893053
Alignment:
Q  15 ttatatagtccgtaatttaaaaatgaaaaataaaccctcctct 57  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||    
T  2893011 ttatatagttcgtaatttaaaaaagaaaagtaaaccctcctct 2893053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 9721293 - 9721378
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||| ||||| |||||||||| ||||| ||||||     | |||||||||| || |||||||||  |||| |||||||||    
T  9721293 aaaaacatgttatatggtccggaatttaaaaaagaaaattaaacc-----cacccctctcttaccttcataaaccctcaattcaaacacac 9721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 10818388 - 10818426
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  10818388 gtccgtaatttaaaaatgaaaagtaaaccctcccctccc 10818426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16738147 - 16738205
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||| ||||||| || |||||||||||| ||||| ||||| |||| ||||    
T  16738147 tttagaaaaacattttatataatctgtaatttaaaaaagaaaagtaaactctcccctcc 16738205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6034223 - 6034275
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    ||||||||||||||||||| |||| | |||||||||| ||||| |||| ||||    
T  6034223 tttagaaaaacatgttatacagtctgcaatttaaaaaagaaaagtaaatcctc 6034275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 21606915 - 21606879
Alignment:
Q  23 tccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21606915 tccgtaatttaaaaatgaaaagtaaaccctcccctcc 21606879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 23091038 - 23090998
Alignment:
Q  56 ctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||| ||||||||| ||||||| ||||||||||||||    
T  23091038 ctcccctcccttcccctcctaaaccttcaatccaaacacac 23090998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1265 - 1174
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||| ||||     |||||||||||||||||||| ||||||  |||||||||||||||    
T  1265 tttagaataacatgttacatagtccgtaatttaaaaaagaaaagtaaa-----ctctcccctctcttcccctcctaaaccctcaatccaaacacact 1174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 393
Target Start/End: Original strand, 39984476 - 39984606
Alignment:
Q  268 gaggttttacttaatgacactcacaccccctttagtttgnnnnnnn--catttacctcccctcgtgtttactttgttagtcacc---gttaccaaacttt 362  Q
    ||||||||||||||||||||| ||||||||| || ||||         ||||||||||||||| || ||||| |||||||||||   ||||||||||||     
T  39984476 gaggttttacttaatgacacttacaccccctctaatttgaaaaaaaaacatttacctcccctcatgcttactctgttagtcaccaccgttaccaaacttc 39984575  T
Q  363 caagcttccttccatggcacctctaaaattg 393  Q
     | ||||||||||||||||||||||||||||    
T  39984576 tatgcttccttccatggcacctctaaaattg 39984606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13634804 - 13634714
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  13634804 tttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 13634714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26414986 - 26414922
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  26414986 tttagaaaaacatgtcatatagtccgtaatttaaaaacgaaaagtaaaccctcccctcccttctc 26414922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16938572 - 16938482
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||| |||||||||||||||||||||| ||||||| |||||| |||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  16938572 tttagagaaacatgttatatagtccgtaacttaaaaaagaaaaacaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 16938482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7544229 - 7544161
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcc 69  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | | |||||| ||||| || |||||    
T  7544229 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaatttagccctcccctcccttcccttcc 7544161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9856973 - 9856915
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||| ||||    
T  9856973 tttagaaaaacatgttatatagtccttaatttaaaaaagaaaactaaactctcccctcc 9856915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20147027 - 20147088
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctc 63  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  20147027 tttagaaaaacatgt-atataatccgtaatttaaaaatgaaaagtaaaccctcccttcccctc 20147088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 2550505 - 2550592
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacaca 95  Q
    |||||||||||||||||||||||| |  ||||||| ||||| ||||||     |||||||| ||||||||| ||||||  |||||||||||||    
T  2550505 tagaaaaacatgttatatagtccgaatcttaaaaaagaaaagtaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacaca 2550592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 1657969 - 1658054
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||| |||||  |||||||||||||||||||||| |||||||||| |||||     |||||||| ||||||  | ||||||||||||    
T  1657969 aaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctccc-----ttcccctcctaaaccctccatccaaacacac 1658054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 14245218 - 14245287
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||| |||||     |||||||| ||||||||| ||||||  ||||||||||||||    
T  14245218 gtccgtaatttaaaaatgaaaaacaaacc-----ctcccctcccttcccctcctaaaccctcaatccaaacacac 14245287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40815390 - 40815300
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| ||||||||||||||||||| |||||||||||| ||||| ||||   ||||||  | || ||||||||| |||| || ||||||||||||||    
T  40815390 tttataaaaacatgttatatagtctgtaatttaaaaaagaaaagtaaa---tcctct--cttcccttcccctcctaaatcttcaatccaaacacac 40815300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 4373722 - 4373770
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  4373722 aaaaacttgttatatagtccgtaatttaaaaaagaaaagtaaatcctcc 4373770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11419312 - 11419360
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    |||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  11419312 tttagaaaaacatgttatataacccgtaatttaaaaaagaaaagtaaac 11419360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22022943 - 22022907
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22022943 tttagaaaaatatgttatatagtccgtaatttaaaaa 22022907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42681546 - 42681510
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42681546 tttagaaaaacatgttatatagtccgtaattaaaaaa 42681510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 28279633 - 28279680
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  28279633 aaaaacatgttatatattccataatttaaaaaggaaaagtaaaccctc 28279680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 8551621 - 8551659
Alignment:
Q  58 cccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  8551621 cccctctcttcccctcctaaaccttcaatccaaacacac 8551659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 12600703 - 12600745
Alignment:
Q  56 ctcccctctcttcccctcataaacctccaatccaaacacactt 98  Q
    |||||||||||||||||| |||||||  |||||||||||||||    
T  12600703 ctcccctctcttcccctcctaaaccttaaatccaaacacactt 12600745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36363125 - 36363067
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||||||| |||| |||||| | ||||| ||||| |||| ||||    
T  36363125 tttagaaaaacatgttatatagtacgtagtttaaacaagaaaattaaactctcccctcc 36363067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 39966108 - 39966150
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaa 48  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  39966108 aaaaatatgttatataatccgtaatttaaaaataaaaaataaa 39966150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11756970 - 11756917
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||| |||||||||||||||| |||||||||||||  ||||| |||| ||||    
T  11756970 tttagagaaacatgttatatagttcgtaatttaaaaaataaaaacaaactctcc 11756917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25655123 - 25655187
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||    
T  25655123 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaagttaaaccctcccctcccttctc 25655187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24560310 - 24560251
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||    
T  24560310 tttagaaaaacatgttacatagtccgtaatttaaaaaagaaaaacaaaccctcccctccc 24560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30200242 - 30200293
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccct 52  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  30200242 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccct 30200293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 41110476 - 41110562
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||     |||||||||| |||||  ||||||||||||||    
T  41110476 gaaaaacatgttatctagtccgtaatttaaaaacgaaaagtaaaccttcctctcc-----cttcccctcacaaaccctcaatccaaacacac 41110562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 28582661 - 28582719
Alignment:
Q  2 ttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||    
T  28582661 ttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctcccctccc 28582719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 651824 - 651771
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||    
T  651824 tttagaaaaacatgttatatagtctataatttaaaaaagaaaagtaaaccctcc 651771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 220548 - 220612
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| ||||  |||| ||||| ||||    
T  220548 tttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaattctcccctcccttctc 220612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21773875 - 21773788
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaaca 93  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |||     || || || ||||||||| ||||||| |||||||||||    
T  21773875 tttagaaaaacatgttatatagtccgtaatttagaaaagaaaagtatacc-----cttccttcccttcccctcctaaaccttcaatccaaaca 21773788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2387911 - 2387970
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||||||||| |||| ||||| ||| ||||| |||||||||| |||||    
T  2387911 tttagaaaaacatgttatatagaccgtgatttagaaaagaaaagtaaaccctcccctccc 2387970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18654751 - 18654843
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacact 97  Q
    |||||| ||||||||||||||||||||||||||||    |||| |||| |   |||||||||| ||||||||| ||||||  |||| ||||||||||    
T  18654751 tttagagaaacatgttatatagtccgtaatttaaa----aaaagtaaaacaaactctcccctcccttcccctcctaaaccctcaattcaaacacact 18654843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 6803370 - 6803442
Alignment:
Q  19 atagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||| |||||||||||| ||||| |||||     |||| |||||||||||||| ||||||| ||||||||||||||    
T  6803370 atagtctgtaatttaaaaaagaaaattaaac-----tctctcctctcttcccctcctaaaccttcaatccaaacacac 6803442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 37102305 - 37102358
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||||||||||||| || || |||||| ||| ||||    
T  37102305 aaaaacatgttatatagtccgtaatttaaaaaagataagtaaaccttcccctcc 37102358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10748448 - 10748484
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10748448 tttagaaaaacatgttatatactccgtaatttaaaaa 10748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46204979 - 46204931
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||||||||||||||| | ||||||||||| ||||| |||||    
T  46204979 tttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaaac 46204931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 9312636 - 9312687
Alignment:
Q  12 atgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctc 63  Q
    ||||||||||||| |||||||||||| |||||  ||||||||| ||||||||    
T  9312636 atgttatatagtcggtaatttaaaaaagaaaatcaaaccctcccctcccctc 9312687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14898069 - 14898022
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaa 48  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| ||||    
T  14898069 tttagaaaaacatgtcatatagtctgtaatttaaaaaagaaaagtaaa 14898022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27542082 - 27542141
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||| |||||||||||| | ||||||||||| |||||| |||| |||| |||||    
T  27542082 tttagaaaaatatgttatatagttcataatttaaaaaagaaaaacaaactctcccctccc 27542141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 46556232 - 46556178
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||| |||||||||| |||||||||||| ||||| ||||| |||| ||||    
T  46556232 gaaaaacatattatatagtctgtaatttaaaaaagaaaattaaactctcccctcc 46556178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 30200160 - 30200123
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  30200160 gtccgtaatttaaaaatgaaaactaaaccctcccctcc 30200123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 37102221 - 37102184
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  37102221 gtccgtaatttaaaaatgaaaactaaaccctcccctcc 37102184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 52474088 - 52474125
Alignment:
Q  23 tccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  52474088 tccgtaatttaaaaataaaaagtaaaccctcctctccc 52474125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 42772087 - 42772047
Alignment:
Q  56 ctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||| ||||||||| ||||||| ||||||||||||||    
T  42772087 ctcccctcccttcccctcttaaaccttcaatccaaacacac 42772047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54574512 - 54574560
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||| |||||||||||| |||||| ||||| |||||| ||||    
T  54574512 tttagaaaaacgtgttatatagtctgtaattaaaaaaagaaaaacaaac 54574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7979233 - 7979174
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  7979233 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaactctcctctccc 7979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7503105 - 7503167
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctc 63  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||| ||||||||    
T  7503105 tttagaaaaacatgttatataatccataatttaaaaacgaaaagtaaaccctcccctcccctc 7503167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16653042 - 16652989
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  16653042 tttataaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcc 16652989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11575557 - 11575621
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    ||||||||||||||||||||| |  |||||||||||||||||| |||||||||| ||||| ||||    
T  11575557 tttagaaaaacatgttatataatttgtaatttaaaaatgaaaagtaaaccctcccctcccttctc 11575621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 1281235 - 1281184
Alignment:
Q  2 ttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  1281235 ttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctc 1281184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31543223 - 31543282
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||||||| |||| ||||||||||| ||||| |||||||||| |||||    
T  31543223 tttagaaaaacatgttatatggtccataatttaaaaaagaaaagtaaaccctcccctccc 31543282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37032472 - 37032419
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  37032472 tttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaaataaactctcc 37032419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42650487 - 42650540
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||    
T  42650487 tttagaaaaacatgttatatattccgtaatttaaaaacgaaaagtaaactctcc 42650540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11033510 - 11033455
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctc 56  Q
    |||||||||||||| |||||||||||| ||||||||| ||||| ||||||| ||||    
T  11033510 tttagaaaaacatgatatatagtccgttatttaaaaaagaaaagtaaacccccctc 11033455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37923229 - 37923280
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccct 52  Q
    |||||||||||||||||||||||| ||||||||||||| || | ||||||||    
T  37923229 tttagaaaaacatgttatatagtctgtaatttaaaaataaatattaaaccct 37923280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11785619 - 11785561
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||| ||||    
T  11785619 tttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaaactctcccctcc 11785561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 40990342 - 40990383
Alignment:
Q  8 aaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  40990342 aaacatgttatatagtccgtaatttaaaaaagaaaaacaaac 40990383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1027000 - 1027067
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcc 69  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| | |||||| | ||||| || |||||    
T  1027000 tttagaaaaacat-ttatatagtccgtaatttaaaaaagaaaagtgaacccttccctcccttcccttcc 1027067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3727006 - 3727054
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| |||||    
T  3727006 tttagaaaaacatgttatatagtctgtaatctaaaaaagaaaagtaaac 3727054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6315155 - 6315119
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6315155 tttagaaaaacatgttatatagtccgtaattaaaaaa 6315119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41103657 - 41103709
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctc 53  Q
    ||||||||||||||||||||||   |||||||||||| ||||| |||||||||    
T  41103657 tttagaaaaacatgttatatagcttgtaatttaaaaaagaaaagtaaaccctc 41103709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2248545 - 2248455
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||  |||||||||||||| | ||| | ||     |||||||||| ||||||||| |||||   ||||||||||||||    
T  2248545 tttagaaaaacatgttatataaaccgtaatttaaaaaaggaaattgaa-----ctctcccctcccttcccctcctaaactctcaatccaaacacac 2248455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 4247699 - 4247761
Alignment:
Q  33 aaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||| ||||| ||||||||||||| || || ||||||||| ||||||| ||||||||||||||    
T  4247699 aaaaaagaaaagtaaaccctcctctacc-tcccttcccctcctaaaccttcaatccaaacacac 4247761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9718630 - 9718720
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||| |||||||||||| | ||||||||||| ||||| ||||     || ||||||| |||| |||| ||||||  ||||||||||||||    
T  9718630 tttagaaaaatatgttatatagttcataatttaaaaaagaaaagtaaa-----ctttcccctcccttctcctcctaaaccctcaatccaaacacac 9718720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 29358492 - 29358547
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaaaa-taaaccctcctct 57  Q
    |||||||| |||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  29358492 tagaaaaatatgttatataatccgtagtttaaaaatgaaaaagtaaacactcctct 29358547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30479868 - 30479958
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||  |||||||| ||| |||||||| ||||| |||||||||| ||||      |||| ||||||||||  ||||||||||||||    
T  30479868 tttagaaaaacatgacatatagtctgtagtttaaaaaagaaaactaaaccctccgctcc-----attcctctcataaaccctcaatccaaacacac 30479958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 3726935 - 3726897
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  3726935 gtccgtaatttaaaaatgaaaaataaaccgtcctttccc 3726897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13405069 - 13405027
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaa 43  Q
    |||||||||||||||||||||||| || ||||||||| |||||    
T  13405069 tttagaaaaacatgttatatagtctgttatttaaaaaagaaaa 13405027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 31543143 - 31543106
Alignment:
Q  23 tccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  31543143 tccgtaatttaaaaatgaaaagtaaaccctcccctccc 31543106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 31738514 - 31738442
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacc 80  Q
    |||| ||||||||||||||||| ||||||||||||  ||||| |||     ||||||| |||||||||||| ||||||    
T  31738514 tagagaaacatgttatatagtctgtaatttaaaaaaaaaaaaaaaa-----ctctcccttctcttcccctcctaaacc 31738442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33922613 - 33922560
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||| ||||| ||||||||||||||| |||||||||| ||||| ||||| ||||    
T  33922613 tttaaaaaaatatgttatatagtccggaatttaaaaaagaaaagtaaactctcc 33922560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36347692 - 36347782
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||     ||||||| || ||||||||| ||||||  ||||||||||||||    
T  36347692 tttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaa-----ctctcccttcccttcccctcctaaaccctcaatccaaacacac 36347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 35736268 - 35736178
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| |||     || |||||||| ||||||||| ||||||  ||||||||||||||    
T  35736268 tttagaaaaacatgttatctagtccgtgatttaaaaaagaaaattaa-----cccctcccctcccttcccctcctaaaccctcaatccaaacacac 35736178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19566972 - 19567030
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||||||||||||||||||   ||| |||||||||| ||||    
T  19566972 tttagaaaaacatgttatatagtccgtaatttaaaaaatgaaattaaaccctcccctcc 19567030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 23748184 - 23748130
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  23748184 gaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaaccctcccctcc 23748130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39821762 - 39821704
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcc 59  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| |||||||||| ||||    
T  39821762 tttagaaaaacatgttatagaatccataatttaaaaatgaaaagtaaaccctcccctcc 39821704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8427022 - 8427110
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacac 94  Q
    |||||||||||||||||||| ||| ||| |||||||||||||| ||||     |||||||||| ||| ||||| ||||||  ||||||||||||    
T  8427022 tttagaaaaacatgttatatcgtctgtactttaaaaatgaaaagtaaa-----ctctcccctccctttccctcctaaaccctcaatccaaacac 8427110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 15224847 - 15224904
Alignment:
Q  3 tagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||| ||| |||||    
T  15224847 tagaaaaacatgttatatagcccgtaatttaaaaaagaaaagtaaaccatcccctccc 15224904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36046353 - 36046442
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||| |||| |||||||||| ||||||||||||||||  |||| ||||||      ||||||| ||||||||||||||||  ||||||||||||||    
T  36046353 tttataaaagcatgttatatcgtccgtaatttaaaaaacaaaagtaaacc------tcccctcccttcccctcataaaccctcaatccaaacacac 36046442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9591986 - 9592022
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaa 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9591986 tttagaaaaacatgttatatagtgcgtaatttaaaaa 9592022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28262594 - 28262642
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| |||||    
T  28262594 tttagaaaaacatgttatatagtcaataatttaaaaaagaaaagtaaac 28262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 9427074 - 9426988
Alignment:
Q  5 gaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||  |||||||||||| |||||  |||||     ||| |||| ||||||||| ||||| | ||||||||||||||    
T  9427074 gaaaaacatgttatatagttggtaatttaaaaaagaaaatcaaacc-----ctctcctcccttcccctcctaaactttcaatccaaacacac 9426988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39732880 - 39732926
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaa 48  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  39732880 tttagaaaaacatgt-atatagtccgtaatttaaaaacgaaaagtaaa 39732926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 36046276 - 36046207
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||||||||     ||||||||||  |||||||| ||||||  | ||||||||||||    
T  36046276 gtccgtaatttaaaaatgaaaaataaa-----ctctcccctcatttcccctcctaaaccctccatccaaacacac 36046207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 12541853 - 12541796
Alignment:
Q  6 aaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctc 63  Q
    ||||| || ||||||||||||||||||||||| ||||| || || |||| ||||||||    
T  12541853 aaaaatattttatatagtccgtaatttaaaaaagaaaagtagactctcccctcccctc 12541796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39341 - 39400
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctccc 60  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||    
T  39341 tttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaaccctcccctccc 39400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 39259 - 39189
Alignment:
Q  22 gtccgtaatttaaaaatgaaaaataaaccctcctctcccctctcttcccctcataaacctccaatccaaacacac 96  Q
    |||||||||||||||||||||| |||||||||    ||||||  |||||||| ||||||  | ||||||||||||    
T  39259 gtccgtaatttaaaaatgaaaagtaaaccctc----cccctcatttcccctcctaaaccctccatccaaacacac 39189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6677 - 6613
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctcccctctc 65  Q
    ||||||| |||| ||||||||||| |||||||||||| ||||| |||||||||| ||||| ||||    
T  6677 tttagaataacaagttatatagtctgtaatttaaaaaagaaaagtaaaccctcccctcccttctc 6613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18863 - 18807
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcctctc 58  Q
    |||||||| ||||||||||||||| || ||||||||| | ||||||||||||||||||    
T  18863 tttagaaagacatgttatatagtctgtcatttaaaaaag-aaaataaaccctcctctc 18807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16447 - 16500
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaaccctcc 54  Q
    |||||| |||||||||||||||||||| | ||||||| ||||| ||||||||||    
T  16447 tttagacaaacatgttatatagtccgtgagttaaaaacgaaaagtaaaccctcc 16500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16043 - 15995
Alignment:
Q  1 tttagaaaaacatgttatatagtccgtaatttaaaaatgaaaaataaac 49  Q
    |||| ||||||||||||||||||| |||||||||||| ||||| |||||    
T  16043 tttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaagtaaac 15995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University