View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_high_9 (Length: 375)
Name: NF16478_high_9
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 26427356 - 26427148
Alignment:
| Q |
18 |
aagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaagg |
117 |
Q |
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| T |
26427356 |
aagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaagg |
26427257 |
T |
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| Q |
118 |
taattgnnnnnnnnnnnnnnnnnncgcaatattcttatattattagagctcatagttgaatttaattacttgttttgtgttcttaggtcttattaacact |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427256 |
taattgtttttgcttttttattttcgcaatattcttatattattagagctcatagttgaatttaattacttgttttgtgttcttaggtcttattaacact |
26427157 |
T |
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| Q |
218 |
ccaagtgaa |
226 |
Q |
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||||||||| |
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| T |
26427156 |
ccaagtgaa |
26427148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 26427070 - 26427006
Alignment:
| Q |
304 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
368 |
Q |
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| T |
26427070 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
26427006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 28009525 - 28009630
Alignment:
| Q |
18 |
aagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009525 |
aagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaagg |
28009624 |
T |
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| Q |
118 |
taattg |
123 |
Q |
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|||||| |
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| T |
28009625 |
taattg |
28009630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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