View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16478_low_1 (Length: 803)
Name: NF16478_low_1
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_low_1 |
 | |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 12 - 787
Target Start/End: Complemental strand, 11688709 - 11687943
Alignment:
| Q |
12 |
gtgaaaagaagccttgaacaacttctctcaagtggtacggttagtgctgctgatgagtctgttgatgatggttcgcttccgctgtcatcttttgaaaagg |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688709 |
gtgaaaagaagtcttgaacaacttctctcaaat---------agtgctgctgatgagtctgttgatgatggttcgcttccgctgtcatcttttgaaaagg |
11688619 |
T |
|
| Q |
112 |
agtctccatcctctcccgtggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688618 |
ggtctccatcctctcccgtggctccaaagttgaccgacacagctgttagttctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatat |
11688519 |
T |
|
| Q |
212 |
aagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagtgtcctttt |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11688518 |
aagaaacagcatatatgccacagatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggaccgagtgtcctttt |
11688419 |
T |
|
| Q |
312 |
taccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaaacgtggtg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11688418 |
taccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaactagggattgcaaacgtggtg |
11688319 |
T |
|
| Q |
412 |
atatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688318 |
atatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggt |
11688219 |
T |
|
| Q |
512 |
gtgcttttttgcacatgttgctgaagagctgcgtccatcgcatgcttccattagatcagctgcatctgctcctattgtcatggacatggctgcttcaacg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688218 |
gtgcttttttgcacatgttgctgaagagctgcgtccatcgcatgcttccattagatcagctgcatctgctcctattgtcatggacatggctgcttcaacg |
11688119 |
T |
|
| Q |
612 |
agcctttatcgtggttcgctatcagcaatctcttcgatgtatccaccaccttttgcacagcctttgtctccatatgctaatggcctctttgatggtcagc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688118 |
agcctttatcgtggttcgctatcagcaatctcttcgatgtatccaccaccttttgcacagcctttgtctccatatgctaatggcctctttgatggtcagc |
11688019 |
T |
|
| Q |
712 |
agcacatgctaaatgacttgagctgtttctcacagccctgtccgagtaccatttcattgggtcggtctgttaactc |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11688018 |
agcacatgctaaatgacttgagctgtttctcacagccctgtccgggtaccatttcattgggtcggtctgttaactc |
11687943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 104 - 548
Target Start/End: Complemental strand, 11754279 - 11753841
Alignment:
| Q |
104 |
tgaaaaggagtctccatcctctcccgtggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaatt |
203 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||| |||||||||||||||| | || || ||||||||||| |||||||||||| || || |
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|
| T |
11754279 |
tgaaaatgaatctccatcctctcctgtggctccaaagtttaccgacacagctgttaattctgcatcagaaaagaaagaatatccaattg------cactt |
11754186 |
T |
|
| Q |
204 |
cctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagt |
303 |
Q |
| |
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|| | || || |||||| || ||||| ||||||||||||||||||||| | ||||| |||||||||| |||||||||| ||||| |||||| ||||| |
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|
| T |
11754185 |
ccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggaccgagt |
11754086 |
T |
|
| Q |
304 |
gtcctttttaccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaa |
403 |
Q |
| |
|
|||||||| | |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||| ||||| |
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|
| T |
11754085 |
gtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtaccatgccctgattttaaaaaaggggactgcaa |
11753986 |
T |
|
| Q |
404 |
acgtggtgatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaac |
503 |
Q |
| |
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||||| |||| |||||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||| || |
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| T |
11753985 |
acgtgcagatacgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgac |
11753886 |
T |
|
| Q |
504 |
cgaaaggtgtgcttttttgcacatgttgctgaagagctgcgtcca |
548 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11753885 |
cgaaaggtgtgcttttttgcacacttagctgaagagctgcgtcca |
11753841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 114 - 517
Target Start/End: Complemental strand, 9314998 - 9314595
Alignment:
| Q |
114 |
tctccatcctctcccgtggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatataa |
213 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || |||||||||| | ||||| ||||||||||| | |||||| |||| ||||| ||||||| |||| |
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|
| T |
9314998 |
tctccatcctctcctgtggctcccaagtttacagatacagctgttaattctacatcagaaaagaaagagtatccagttgacccatctcttcctgacataa |
9314899 |
T |
|
| Q |
214 |
gaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagtgtccttttta |
313 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| ||||||| | || |||| |||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
9314898 |
aaaacagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgcatactctcatgattggactgagtgtccttttgt |
9314799 |
T |
|
| Q |
314 |
ccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaaacgtggtgat |
413 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| |||| |||| ||| |
|
|
| T |
9314798 |
gcatcctggagagaatgctcgaaggagagaccctagaaagtttcactacagctgtgtgccatgccctgattttaggaaaggggcttgccgacgttcggat |
9314699 |
T |
|
| Q |
414 |
atgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||| |||||||| |||| ||||||||||| ||||| |
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|
| T |
9314698 |
atgtgtgaatatgctcatggagtattcgagtgctggctacacccagctcagtatcggacaaggctgtgcaaagacggtatgggttgtaaccgaagggtgt |
9314599 |
T |
|
| Q |
514 |
gctt |
517 |
Q |
| |
|
|||| |
|
|
| T |
9314598 |
gctt |
9314595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 706 - 787
Target Start/End: Complemental strand, 11753623 - 11753542
Alignment:
| Q |
706 |
gtcagcagcacatgctaaatgacttgagctgtttctcacagccctgtccgagtaccatttcattgggtcggtctgttaactc |
787 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||| || |||||||| || |||||||||||||||| |
|
|
| T |
11753623 |
gtcagcagcacatgctaaatgacttaagttgtttctcacagccccgtcctggtgccatttcagtgagtcggtctgttaactc |
11753542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 11753803 - 11753736
Alignment:
| Q |
565 |
gatcagctgcatctgctcctattgtcatggacatggctgcttcaacgagcctttatcgtggttcgcta |
632 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
11753803 |
gatcagctgcatctgctcccaatgtcatggacaatgctgctgcaacgagcctttatcgtggtttgcta |
11753736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 698 - 754
Target Start/End: Complemental strand, 9314261 - 9314205
Alignment:
| Q |
698 |
ctttgatggtcagcagcacatgctaaatgacttgagctgtttctcacagccctgtcc |
754 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9314261 |
ctttgatgggcagcagcagatactaaatgacttgagctgtttctcacagccccgtcc |
9314205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 565 - 674
Target Start/End: Complemental strand, 9314526 - 9314417
Alignment:
| Q |
565 |
gatcagctgcatctgctcctattgtcatggacatggctgcttcaacgagcctttatcgtggttcgctatcagcaatctcttcgatgtatccaccaccttt |
664 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||||||||||||| | | |||||||| | |||||| | |||| ||||||||| ||||| || | |||| || |
|
|
| T |
9314526 |
gatcagctgcttctactgctaatgtcatggacatggctgctgctatgagccttttccctggttcaccatcatcaatctctttgatgtctcaatcaccctt |
9314427 |
T |
|
| Q |
665 |
tgcacagcct |
674 |
Q |
| |
|
|||||||||| |
|
|
| T |
9314426 |
tgcacagcct |
9314417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 4520 - 4609
Alignment:
| Q |
183 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgt |
272 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| ||||||||| ||||| | |||||||||||| |||| ||| |||||||||||| |||| |
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|
| T |
4520 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
4609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 487
Target Start/End: Original strand, 4748 - 4824
Alignment:
| Q |
411 |
gatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaaga |
487 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| | ||||| ||||| |
|
|
| T |
4748 |
gataagtgtgaatatgctcatgggatattcgagtgctggctacacccagatcagtatcgaacacgactctgtaaaga |
4824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 19408954 - 19409043
Alignment:
| Q |
183 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgt |
272 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| ||||||||| ||||| | |||||||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
19408954 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
19409043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 487
Target Start/End: Original strand, 19409182 - 19409258
Alignment:
| Q |
411 |
gatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaaga |
487 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| | ||||| ||||| |
|
|
| T |
19409182 |
gataagtgtgaatatgctcatgggatattcgagtgctggctacacccagatcagtatcgaacacgactctgtaaaga |
19409258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 36456153 - 36456241
Alignment:
| Q |
174 |
aagaaaaaatatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggt |
262 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||| | |||||||||||| | || ||||||||||| |||||||| ||||||| |
|
|
| T |
36456153 |
aagaaagaatatcctgttgatccatcccttcctgatatcaaaaacagcatatactcaactgatgaatttcgaatgtattctttcaaggt |
36456241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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