View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_low_11 (Length: 369)
Name: NF16478_low_11
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 31468610 - 31468947
Alignment:
| Q |
15 |
tattgtaggatatatcaaccacatacaacttactacaattcaccaatgactttataaactccaaatctttagttgaattgcttccaagattgttttggga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31468610 |
tattgtaggatatatcaaccacatacaacttactacaattcaccaatgactttataaactccaaatctttagttgaattgcttccaagattgttttggga |
31468709 |
T |
|
| Q |
115 |
caaacctatgagctgaagatcttttagcttcccaagatttggaacttgacccgtgaatcggttttgagtgatatcaaatgatcgaaggttagaagcattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31468710 |
caaacctatgagctgaagatcttttagcttcccaagatttggaacttgacccgtgaatcggttttgagtgatatcaaatgatcgaaggttagaagcattt |
31468809 |
T |
|
| Q |
215 |
gatatggaagttgggattggacctgagaattgattcccaccaatgaaaagtgttttgagattgggaagagtgtgaaacattttttgtggaagagagccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31468810 |
gatatggaagttgggattggacctgagaattgattcccaccaatgaaaagtgttttgagattgggaagagtgtgaaacattttttgtggaagagagccat |
31468909 |
T |
|
| Q |
315 |
taaatttgttcaagtcaacagcaagtagagtaagagat |
352 |
Q |
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| T |
31468910 |
taaatttgttcaagtcaacagcaagtagagtaagagat |
31468947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 10579573 - 10579522
Alignment:
| Q |
207 |
aagcatttgatatggaagttgggattggacctgagaattgattcccaccaat |
258 |
Q |
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| T |
10579573 |
aagcatttgcaatggaagttgggattggaccagagaattgatttcctccaat |
10579522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 10590070 - 10590121
Alignment:
| Q |
207 |
aagcatttgatatggaagttgggattggacctgagaattgattcccaccaat |
258 |
Q |
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|
||||||||| |||||||||||||||||||| ||||||||||| || ||||| |
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| T |
10590070 |
aagcatttgcaatggaagttgggattggaccagagaattgatttcctccaat |
10590121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 11049560 - 11049609
Alignment:
| Q |
209 |
gcatttgatatggaagttgggattggacctgagaattgattcccaccaat |
258 |
Q |
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| T |
11049560 |
gcatttgttatggaagtggggattggtcctgagaattgatttcccccaat |
11049609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 7191573 - 7191529
Alignment:
| Q |
205 |
agaagcatttgatatggaagttgggattggacctgagaattgatt |
249 |
Q |
| |
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|||||||||||| |||||| | ||||||| ||||||||||||||| |
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|
| T |
7191573 |
agaagcatttgaaatggaaatagggattgtacctgagaattgatt |
7191529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 10599656 - 10599616
Alignment:
| Q |
205 |
agaagcatttgatatggaagttgggattggacctgagaatt |
245 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||| |
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| T |
10599656 |
agaagcatttgaaattgaagtagggattggacctgagaatt |
10599616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 39885685 - 39885724
Alignment:
| Q |
218 |
atggaagttgggattggacctgagaattgattcccaccaa |
257 |
Q |
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||||| |||||||||||||||||||||||||| ||||||| |
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| T |
39885685 |
atggatgttgggattggacctgagaattgatttccaccaa |
39885724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 12930844 - 12930800
Alignment:
| Q |
205 |
agaagcatttgatatggaagttgggattggacctgagaattgatt |
249 |
Q |
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||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
12930844 |
agaagcatttgcaatcgaagtagggattggacctgagaattgatt |
12930800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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