View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16478_low_12 (Length: 289)

Name: NF16478_low_12
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16478_low_12
NF16478_low_12
[»] chr2 (15 HSPs)
chr2 (12-289)||(32174050-32174327)
chr2 (113-289)||(32147546-32147722)
chr2 (27-210)||(32182094-32182277)
chr2 (25-286)||(32534056-32534305)
chr2 (122-289)||(32118463-32118631)
chr2 (113-288)||(32156375-32156550)
chr2 (170-288)||(32182294-32182412)
chr2 (146-288)||(32212169-32212311)
chr2 (120-288)||(32152314-32152477)
chr2 (163-289)||(2821289-2821414)
chr2 (190-288)||(32157562-32157660)
chr2 (149-289)||(32207093-32207233)
chr2 (113-212)||(2821408-2821507)
chr2 (190-289)||(32110268-32110367)
chr2 (171-289)||(32153367-32153485)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 32174050 - 32174327
Alignment:
Q  12 tgaaatgaaaattgtgacccgactgaagagaatctaaagtctcagtacatgttgatcaaaggatgagaatgtctacttatgagcttagcttaatgtttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32174050 tgaaatgaaaattgtgacccgactgaagagaatctaaagtctcagtacatgttgatcaaaggatgagaatgtctacttatgagcttagcttaatgtttta 32174149  T
Q  112 cagtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttcttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32174150 cagtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttcttt 32174249  T
Q  212 gcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagct 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32174250 gcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagct 32174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 289
Target Start/End: Original strand, 32147546 - 32147722
Alignment:
Q  113 agtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttg 212  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||||||| | |||| ||||||||||||||||||||| |    
T  32147546 agtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatcattttcttgg 32147645  T
Q  213 cttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagct 289  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  32147646 cttggaggaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgttaactcttctgcaatttcagct 32147722  T

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Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 32182094 - 32182277
Alignment:
Q  27 gacccgactgaagagaatctaaagtctcagtacatgttgatcaaaggatgagaatgtctacttatgagcttagcttaatgttttacagtacagaaccaaa 126  Q
    |||||||||||||||||||| |||||||| || |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  32182094 gacccgactgaagagaatctcaagtctcaatagatgttggtcaaaggatgagaatgactacttatgagtttagcttaatgttttacggtacataaccaaa 32182193  T
Q  127 catgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctt 210  Q
    ||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||  |||||||| ||||||||||||    
T  32182194 cataacctatatattttcactacctagttcaccttcttctttgatattttcttcattctttgtctcttcctcgatcattttctt 32182277  T

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Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 286
Target Start/End: Original strand, 32534056 - 32534305
Alignment:
Q  25 gtgacccgactgaagagaatctaaagtctcagtacatgttgatcaaaggatgagaatgtctacttatgagcttagcttaatgttttacagtacagaacca 124  Q
    ||||||| |||||||| ||||| || ||||| || ||||  |||||||||||||| | | ||||||| ||||||||||||||||||| ||||||||||||    
T  32534056 gtgacccaactgaagataatctcaaatctcaatagatgtctatcaaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaacca 32534155  T
Q  125 aacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaata 224  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||  |||||||||| |||            ||||||||| ||     
T  32534156 aacatggcctatatattttctctacctaattcaccttcttctttgatattttcttcattccttacctcttctttg------------gcttggagggatt 32534243  T
Q  225 ttataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttca 286  Q
    | ||||||||||||||||||||||||||||||  |||||| ||||||| |||| ||||||||    
T  32534244 tgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctacaatttca 32534305  T

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Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 122 - 289
Target Start/End: Original strand, 32118463 - 32118631
Alignment:
Q  122 ccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcatttttt-acctcttccttgatcattttctttgcttggagg 220  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||| || ||||||||||| | | | ||||||||||||||||||||| |||||||||    
T  32118463 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattctatcatctcttccttgatcattttcttggcttggagg 32118562  T
Q  221 aatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagct 289  Q
     ||   |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  32118563 gattcaataaggtcttgtaggcattctgtagcatcacaatccttcgttagctcttcagcaatttcagct 32118631  T

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Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 288
Target Start/End: Original strand, 32156375 - 32156550
Alignment:
Q  113 agtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttg 212  Q
    |||||| ||||||||||| ||||||||||||| || |||||||||  ||||||||| |  |||||||| || |||| |||||||||  |||||||||||     
T  32156375 agtacataaccaaacatggcctatatattttcactccctagttcagattcttctttgacattttcttccttctttatctcttcctttttcattttcttta 32156474  T
Q  213 cttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagc 288  Q
    ||||||||||| | ||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||||    
T  32156475 cttggaggaatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtaagctcttctgcaatttcagc 32156550  T

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Target: chr2; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 32182294 - 32182412
Alignment:
Q  170 atgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggtta 269  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  32182294 atgttttcttcattctttacctcttccttgatcattttcttggcttgcaggaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgtta 32182393  T
Q  270 gctcttctgcaatttcagc 288  Q
    |||||||| ||||||||||    
T  32182394 gctcttctccaatttcagc 32182412  T

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Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 288
Target Start/End: Complemental strand, 32212311 - 32212169
Alignment:
Q  146 ctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcatt 245  Q
    ||||||||||||  ||||||||| || |||||||||||||||| ||||||||| || |||||||| ||||||||| || | |||||||||||||||||||    
T  32212311 ctacctagttcatgttcttctttgatattttcttcattttttatctcttccttcatgattttcttggcttggagggatttgataaggtcttgtaggcatt 32212212  T
Q  246 ctgtagcatcacaatccttggttagctcttctgcaatttcagc 288  Q
    |||||||||||  |||||| |||||||||||||||||||||||    
T  32212211 ctgtagcatcaacatcctttgttagctcttctgcaatttcagc 32212169  T

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Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 32152314 - 32152477
Alignment:
Q  120 aaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggag 219  Q
    ||||||||||  |||||||||||||||||| |||||||  |||| |||| ||  ||||||||||||| |  |||||||||||||||||||| |||||||     
T  32152314 aaccaaacatagcctatatattttctctacatagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatcattttcttggcttggaa 32152413  T
Q  220 gaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagc 288  Q
    | || |     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32152414 ggattt-----ggtcttgtaggcattctgtagcatcacaatcctttgttagctcttctgcaatttcagc 32152477  T

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Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 2821414 - 2821289
Alignment:
Q  163 ttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatcc 262  Q
    |||||| |||||||||||||| |||| ||||||||| ||| ||| ||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatcgttt-cttggcttggaggaatttgataaggtcttgtaggcattttgtagcatcacaatcc 2821316  T
Q  263 ttggttagctcttctgcaatttcagct 289  Q
    || ||||||||||||||||||||||||    
T  2821315 tttgttagctcttctgcaatttcagct 2821289  T

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Target: chr2; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 32157562 - 32157660
Alignment:
Q  190 ctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagc 288  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  32157562 ctcttccttgatcattttcttggcttggaggaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgtgagctcttctccaatttcagc 32157660  T

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Target: chr2; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 32207233 - 32207093
Alignment:
Q  149 cctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctg 248  Q
    |||||||||  ||||||||| |  ||||||||||| || |  |||||||||||||||||||| ||||||||| || | |||||||||| ||| |||||||    
T  32207233 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 32207134  T
Q  249 tagcatcacaatccttggttagctcttctgcaatttcagct 289  Q
    | |||||||| ||||| ||||||||||||||||||||||||    
T  32207133 ttgcatcacagtcctttgttagctcttctgcaatttcagct 32207093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 2821507 - 2821408
Alignment:
Q  113 agtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttg 212  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||  || ||||||||||| |||| ||| |||| ||||||||||||||    
T  2821507 agtacataaccaaacatggcctatatattttctctacctagttcagattcttcttggatattttcttcattctttatctcatcctcgatcattttctttg 2821408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 32110268 - 32110367
Alignment:
Q  190 ctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagct 289  Q
    |||||||| || ||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||  |||||| |||| | |||||||||||||||||    
T  32110268 ctcttcctggaccattttcttggcttggaggaatttgataaggtcttgtaagcattctgtagcatcaacatcctttgttaacacttctgcaatttcagct 32110367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 32153367 - 32153485
Alignment:
Q  171 tgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctgtagcatcacaatccttggttag 270  Q
    ||||||||||||| |||| ||| |  ||||| |||||||| |||||||||||| | ||||||| |||||||||||||| |||||||   ||||| |||||    
T  32153367 tgttttcttcattctttatctcatgtttgatgattttcttggcttggaggaatttgataaggtattgtaggcattctgcagcatcaacctcctttgttag 32153466  T
Q  271 ctcttctgcaatttcagct 289  Q
    ||||||| |||||||||||    
T  32153467 ctcttctacaatttcagct 32153485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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