View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_low_13 (Length: 278)
Name: NF16478_low_13
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_low_13 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 5050671 - 5050942
Alignment:
| Q |
1 |
cataggctttcattttataaccactttcccacacagctttagctattctccccgatgtgggacttataccagtgctaatatgctac---ccacacaaatt |
97 |
Q |
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| T |
5050671 |
cataggctttcattttataaccactttcccacacagcttcagctattctccccgatgtgggacttataccagtgctaatatgctactacccacacaaatt |
5050770 |
T |
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| Q |
98 |
ttgttaacaattctacataacgatcttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccat |
197 |
Q |
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| T |
5050771 |
ttgttaacaattctacataaggatgttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccat |
5050870 |
T |
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| Q |
198 |
gaatccaatgaccaacacaatcaatcttatcaatcttcaagcctccaacaaacattccatgagcactttgcaagaacacaa |
278 |
Q |
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| T |
5050871 |
gaatccaatgaccaacaca---------atcaatcttcaagcctccaacaaatattccatgagcacgttgcacgaacacaa |
5050942 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 51274824 - 51274665
Alignment:
| Q |
123 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaa--aaaatcatttacaacaattgaaa-ccatgaatccaatgaccaacacaat |
218 |
Q |
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| T |
51274824 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
51274725 |
T |
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| Q |
219 |
caatcttatcaatcttcaagcctccaacaaacattccatgagcactttgcaagaacacaa |
278 |
Q |
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| T |
51274724 |
caatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaa |
51274665 |
T |
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