View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_low_2 (Length: 704)
Name: NF16478_low_2
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 653; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 14 - 690
Target Start/End: Complemental strand, 45916888 - 45916212
Alignment:
| Q |
14 |
cagagagtgagaatattgcatgatgcatctagaaaacacacctacttttcatggctttcacatgcctgcagaatgggaacctcactcacagtgttggatt |
113 |
Q |
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| T |
45916888 |
cagagagtgagaatattgcatgatgcatctagaaaacacacctacttttcatggctttcacatgcctgcagaatgggaacctcactcacagtgttggatt |
45916789 |
T |
|
| Q |
114 |
ggttggcccgtaagtatttttatttacttcgcacatactccatgcttcttctcttgttctgttatgatgatttagcctcatgttgttgcgtgaaaggaac |
213 |
Q |
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| T |
45916788 |
ggttggcccgtaagtatttttatttacttcgcacatactccatgcttcttctcttgttctgttatgatgatttagcttcatgttgttgcgtgaaaggaac |
45916689 |
T |
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| Q |
214 |
gtgccgataattggcgtgacggtgccgttcatgctcaacttgtgtttaccagggtggcggctgcaatctccagatttgagaaagtaaccgtttgtgctag |
313 |
Q |
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| T |
45916688 |
gtgccgataattggcgtgacggtgccgttcatgctcaacttgtgtttaccagggtggcggctgcaatctccagatttgagaaagtaaccgtttgtgctag |
45916589 |
T |
|
| Q |
314 |
ttcagctcaggttggttaaacttgttgcgattttaattgttataaatggtggaccctttataagaggtccaacacttataaatcagaaattataacgatg |
413 |
Q |
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| T |
45916588 |
ttcagctcaggttggttaaacttgtttcgattttaattgttataaatggtggaccctttataagaggtccaacacttataaatcagaaattataacgatg |
45916489 |
T |
|
| Q |
414 |
gtgacttgttgattgtgagttacatatttatttttcgactttataattaaacttgtctcaactgtgaaattgattagacctctacttctgagagacggaa |
513 |
Q |
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| T |
45916488 |
gtgacttgttgattgcgagttacatatttattttccaactttataattaaacttgtctcaactgtgaaattgattagacctctacttctgagagacggaa |
45916389 |
T |
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| Q |
514 |
tctgttgtcattagtcttgaacattttcaagtattggtccatggtcccatattagaatttgcctattacgttctgataatttgtttctgattatgtgctt |
613 |
Q |
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| T |
45916388 |
tctgttgtcattagtcttgaacattttcaagtattggtccatggtcccatattagaatttgcctattacgttctgataatttgtttctgattatgtgctt |
45916289 |
T |
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| Q |
614 |
tggtttggttcggttcatgattttagtgggagaatgcgcggaatcagctaccggatcatgttagggtcgttgagatt |
690 |
Q |
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| T |
45916288 |
tggtttggttcggttcatgattttagtgggagaatgcgcggaatcagctacctgatcatgttagggtcgttgagatt |
45916212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 45909983 - 45909838
Alignment:
| Q |
194 |
tgttgttgcgtgaaaggaacgtgccgataattggcgtgacggtgccgttcatgctcaacttgtgtttaccagggtggcggctgcaatctccagatttgag |
293 |
Q |
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|||||||||| || ||||||| | ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||| || ||||||||||| ||| |
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| T |
45909983 |
tgttgttgcgggataggaacgcactgataattggcgtgacaatgccgttcatgctcaacgtgtttttgccagggtggtggccgcgatctccagattcgag |
45909884 |
T |
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| Q |
294 |
aaagtaaccgtttgtgctagttcagctcaggttggttaaacttgtt |
339 |
Q |
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| T |
45909883 |
agagtaaccgtttgtgctagttctgctcaggtaagttaaacttgtt |
45909838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 45910110 - 45910042
Alignment:
| Q |
62 |
tcatggctttcacatgcctgcagaatgggaacctcactcacagtgttggattggttggcccgtaagtat |
130 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
45910110 |
tcatggctttcacatgccttcagaatgggaacctcactctcagtgttggatgggttgtcccgtaagtat |
45910042 |
T |
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