View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16478_low_8 (Length: 415)
Name: NF16478_low_8
Description: NF16478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16478_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 51274120 - 51273743
Alignment:
| Q |
16 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttat |
114 |
Q |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaagccttctagtacacggtcacgtttat |
51274026 |
T |
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| Q |
115 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgc |
214 |
Q |
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| T |
51274025 |
tg-tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgc |
51273927 |
T |
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| Q |
215 |
agagaatcaagccatttgaaaatccaacaattctcgaatataag-gatg-atttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaa |
312 |
Q |
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| T |
51273926 |
agagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaa |
51273827 |
T |
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| Q |
313 |
actctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaatt |
396 |
Q |
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| T |
51273826 |
acacaatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaatt |
51273743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
16 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttatt |
115 |
Q |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttatt |
5051398 |
T |
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| Q |
116 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgt |
175 |
Q |
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| T |
5051399 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 231 - 396
Target Start/End: Original strand, 5051458 - 5051624
Alignment:
| Q |
231 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
329 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
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| Q |
330 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaatt |
396 |
Q |
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| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaatt |
5051624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 14908035 - 14907802
Alignment:
| Q |
135 |
tggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaa |
234 |
Q |
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|||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||| | || ||||||||||||| |||| ||||||||| ||| |
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| T |
14908035 |
tggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaa |
14907936 |
T |
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| Q |
235 |
aatccaacaattctcgaatataag-gatgat-ttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttg |
332 |
Q |
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| T |
14907935 |
gatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggtttt |
14907836 |
T |
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| Q |
333 |
caggagtagaaagatggagattggatgacaacga |
366 |
Q |
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| T |
14907835 |
caggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
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