View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16479_high_1 (Length: 472)
Name: NF16479_high_1
Description: NF16479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16479_high_1 |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 19781721 - 19781286
Alignment:
| Q |
14 |
gaacctgtggctccactagccgccaccttggatggtgactttctctttgcaggtggcgtgtcggggagtatccactccttgtcactcccttccggagata |
113 |
Q |
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| T |
19781721 |
gaacctgtggctccactagccgccaccttggatggtgactttctctttgcaggtggcgtgtcggggagtatccactccttgtcactcccttccggagata |
19781622 |
T |
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| Q |
114 |
tcatcaaaacatgcactccttactcgaaacctgtttcgagtctccatcttagtgatgatgggtcactattgatttcaggtaaaaaatttaagtgacaatt |
213 |
Q |
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| T |
19781621 |
tcatcaaaacatgcactccttactcgaaacctgtttcgagtctccatcttagtgatgatgggtcactattgatttcaggtaaaaaatttaagtaacaatt |
19781522 |
T |
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| Q |
214 |
gttaatattcttagtaggagaatgttaaacggtgctcctgaggcattggttaagcaaccaaaacaagtaannnnnnnnataaaaagtggtgtaacttctt |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19781521 |
gttaatattcttagtaggagaatgttaaacagtgctcctggggcattggttaagcaaccaaaacaagtaa-tttttttataaaaagtggtgtaacttctt |
19781423 |
T |
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| Q |
314 |
agtattatactgagagtttgtattatccgtctattttttatttctcgtagattatcaagctaatgatatatctctcgatttcaggtaacaatgatggcac |
413 |
Q |
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| T |
19781422 |
agtattatactgagagtttgtattatccgtctattttttatttctcgtaaattatcaagctaatgatatatctctcgatttcaggtaacaatgatggcac |
19781323 |
T |
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| Q |
414 |
tattgttgtgatcccatcatttaagcttgttgatgat |
450 |
Q |
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| T |
19781322 |
tattgttgtgatcccatcatttaagcttgttgatgat |
19781286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 8435025 - 8435080
Alignment:
| Q |
228 |
taggagaatgttaaacggtgctcctgaggcattggttaagcaaccaaaacaagtaa |
283 |
Q |
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| T |
8435025 |
taggagaatgttaaccagtgcccctgaggcattggttaagcatccaaaataagtaa |
8435080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 6830262 - 6830291
Alignment:
| Q |
254 |
aggcattggttaagcaaccaaaacaagtaa |
283 |
Q |
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| T |
6830262 |
aggcattggttaagcaaccaaaacaagtaa |
6830291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 7609685 - 7609630
Alignment:
| Q |
227 |
gtaggagaatgttaaacggtgctcctgaggcattggttaagcaaccaaaacaagtaa |
283 |
Q |
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||||||||||||||| | ||||||| | |||||||||||||| ||||||| |||||| |
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| T |
7609685 |
gtaggagaatgttaaccagtgctcccggggcattggttaagc-accaaaagaagtaa |
7609630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 18135 - 18107
Alignment:
| Q |
255 |
ggcattggttaagcaaccaaaacaagtaa |
283 |
Q |
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| T |
18135 |
ggcattggttaagcaaccaaaacaagtaa |
18107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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