View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_1 (Length: 649)
Name: NF16480_high_1
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 631
Target Start/End: Original strand, 48876281 - 48876900
Alignment:
| Q |
13 |
aatataatactaattcacccatttgatatggtcctatctaagagtgtgttttgggcaattcaaacaaaagatttctgaannnnnnnn-cctatccccaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48876281 |
aatataatactaattcacccatttgatatggtcctatctaagagtgtgttttgggcaattcaaacaaaagatttctgaatttttttttcctatccccaaa |
48876380 |
T |
|
| Q |
112 |
agatactttaagagaaatacctgtttctcaacatcaacatcacaaaaagatttacataatctttattcaatacaaaattacaaagcagaatatacagttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48876381 |
agatactttaagagaaatacctgtttctcaacatcaacatcacaaaaagatttacataatctttattcaatacaaaattacaaagcagaatatacagttt |
48876480 |
T |
|
| Q |
212 |
atgtactaactactctacaaaaatacagacagatctgaaaacttatgacaagcaaaacaatgcttcaaatatattacagaactacgaacaaggcgacatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48876481 |
atgtactaactactctacaaaaatacagacagatctgaaaacttatgacaagcaaaacaatgcttcaaatatattacagaactacgaacaaggcgacatc |
48876580 |
T |
|
| Q |
312 |
caacccacagtccatcctaatagcaagcctgctccaacaagacttaatcctaaagcaatggcaacagcatatgttgtaatatcacaatttgacttgcctt |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48876581 |
caacccacagtccatcctaatagcaagcctgctccaacaagacttaatcctaaagcaatggcaacagcatatgttgtaatatcacaatttgacttgcctt |
48876680 |
T |
|
| Q |
412 |
ctctttcacgcctgccattggaatatgtctgctttctcttccgggattttctacgttcatacgacatccatggaagatccactggaaatagagtcgaggt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48876681 |
ctctttcacgcctgccattggaatatgtctgctttctcttccgtgattttctacgttcatacgacatccatggaagatccactggaaatagagtcgaggt |
48876780 |
T |
|
| Q |
512 |
tgacagatcattattcttaatctgattgcagagagattccagctgcaacagtttaatcaattgcttatacgcaaaaagttgtgaagcctgtttaaaaata |
611 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48876781 |
tgacagatcattattcttaatctgattgcagagagtttccagctgcaacagtttaatcaattgcttataagcaaaaagttgtgaagcctgtttaaaaata |
48876880 |
T |
|
| Q |
612 |
agtgtaacaatgtgctctct |
631 |
Q |
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||||||| |||||||||||| |
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| T |
48876881 |
agtgtaagaatgtgctctct |
48876900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 9715818 - 9715764
Alignment:
| Q |
307 |
acatccaacccacagtccatcctaatagcaagcctgctccaacaagacttaatcc |
361 |
Q |
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|||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
9715818 |
acatccaaccaacagtccatcctaaaagtaagccagctccaacaaggcttaatcc |
9715764 |
T |
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