View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_11 (Length: 369)
Name: NF16480_high_11
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 6451557 - 6451905
Alignment:
| Q |
1 |
gttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatgaataaagtacctctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451557 |
gttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatgaataaagtacctctaa |
6451656 |
T |
|
| Q |
101 |
ttacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggctgagtatatctgtagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451657 |
ttacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggctgagtatatctgtagg |
6451756 |
T |
|
| Q |
201 |
aagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaacaaaggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451757 |
aagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaacaaaggc |
6451856 |
T |
|
| Q |
301 |
aaaacgtcttgtgacaatgactttattccatacataagaaagtctgatg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451857 |
aaaacgtcttgtgacaatgactttattccatacataagaaagtctgatg |
6451905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 81 - 349
Target Start/End: Original strand, 6457727 - 6457995
Alignment:
| Q |
81 |
gatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatt |
180 |
Q |
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| T |
6457727 |
gatgaacaaggtacctttgattacatgaggaggtggaaacttgaggacttgttcaccgtcagtgcgaaagatttccttaagggccggtaagggactaatt |
6457826 |
T |
|
| Q |
181 |
tggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaa |
280 |
Q |
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| T |
6457827 |
tgactaagtatatctgtaggaagcttaatcccaccttcgaaaagtccacgtacttcatcgaagctatcgaactcatttggtgtgaaattgaggtcaaaaa |
6457926 |
T |
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| Q |
281 |
ttacagattgtaacaaaggcaaaacgtcttgtgacaatgactttattccatacataagaaagtctgatg |
349 |
Q |
| |
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| T |
6457927 |
tcacagatttaaacaatggtatgacattttgagacagtgattttattccatacataaggaagtctgatg |
6457995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 6264220 - 6264308
Alignment:
| Q |
178 |
atttggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaa |
266 |
Q |
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|||||||| ||||||||||| || ||||||||||| ||||| | || || |||| ||||| ||||||||||| |||||||| ||||| |
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| T |
6264220 |
atttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattcattcggtgtgaa |
6264308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 79 - 349
Target Start/End: Complemental strand, 9603701 - 9603431
Alignment:
| Q |
79 |
aagatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctga |
178 |
Q |
| |
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||||| ||||| |||||||| ||||| || |||||||||||||| ||| |||||||||| || ||||||| |||||||| || |||| ||||| |||| |
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| T |
9603701 |
aagattaataatgtacctctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactga |
9603602 |
T |
|
| Q |
179 |
tttggctgagtatatctgtaggaagcttaattccaccttcgaa-aagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaa |
277 |
Q |
| |
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||| ||| | ||||| ||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
9603601 |
ttttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtc-acgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaa |
9603503 |
T |
|
| Q |
278 |
aaattacagattgtaacaaaggcaaaacgtcttgtgacaatgactttattccatacataagaaagtctgatg |
349 |
Q |
| |
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| |||||||||| |||||||| || || ||||| |||||||| ||||||||||| |||| ||||| |||| |
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| T |
9603502 |
agattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaagtcagatg |
9603431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 42693925 - 42694025
Alignment:
| Q |
187 |
agtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacag |
286 |
Q |
| |
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|||| |||||| || |||||||||||||| || | | |||| | |||||||| ||||||||||||||||| || |||||||| | |||||| ||||||| |
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| T |
42693925 |
agtacatctgttggcagcttaattccaccctcatacaatccatgaacttcatcaaagctatcaaactcatttggtgtgaaatttaaatcaaagattacag |
42694024 |
T |
|
| Q |
287 |
a |
287 |
Q |
| |
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| |
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|
| T |
42694025 |
a |
42694025 |
T |
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