View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16480_high_14 (Length: 334)

Name: NF16480_high_14
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16480_high_14
NF16480_high_14
[»] chr4 (12 HSPs)
chr4 (13-317)||(42468485-42468790)
chr4 (13-317)||(42470814-42471119)
chr4 (36-317)||(45162038-45162318)
chr4 (36-317)||(45166930-45167210)
chr4 (36-317)||(50855817-50856086)
chr4 (104-317)||(19429122-19429334)
chr4 (177-317)||(13774151-13774290)
chr4 (36-251)||(8739251-8739467)
chr4 (177-317)||(13776449-13776587)
chr4 (114-239)||(43179576-43179710)
chr4 (13-74)||(45161982-45162046)
chr4 (13-74)||(45166874-45166938)
[»] chr7 (24 HSPs)
chr7 (36-317)||(3932574-3932853)
chr7 (36-317)||(3934813-3935092)
chr7 (36-317)||(8733541-8733819)
chr7 (37-317)||(36464259-36464547)
chr7 (36-317)||(8414536-8414815)
chr7 (36-254)||(19786622-19786840)
chr7 (36-254)||(19788928-19789146)
chr7 (36-315)||(3052059-3052341)
chr7 (36-317)||(42678617-42678903)
chr7 (177-317)||(8731222-8731359)
chr7 (177-251)||(28610350-28610424)
chr7 (200-317)||(18395337-18395451)
chr7 (267-317)||(16496999-16497049)
chr7 (267-317)||(16535181-16535231)
chr7 (267-317)||(16630431-16630481)
chr7 (208-317)||(21769115-21769220)
chr7 (129-179)||(19094042-19094092)
chr7 (257-317)||(19786860-19786920)
chr7 (257-317)||(19789166-19789226)
chr7 (36-72)||(3051999-3052035)
chr7 (36-72)||(8414839-8414875)
chr7 (13-75)||(3932518-3932583)
chr7 (13-75)||(3934757-3934822)
chr7 (37-72)||(36464572-36464607)
[»] chr1 (13 HSPs)
chr1 (36-317)||(29833122-29833400)
chr1 (36-317)||(734623-734903)
chr1 (36-317)||(2403881-2404152)
chr1 (161-317)||(29833856-29834000)
chr1 (40-317)||(8933595-8933878)
chr1 (177-317)||(10911352-10911489)
chr1 (177-317)||(10909108-10909246)
chr1 (174-317)||(2410003-2410136)
chr1 (177-317)||(13011698-13011835)
chr1 (100-254)||(18353733-18353889)
chr1 (36-72)||(734927-734963)
chr1 (36-99)||(2416660-2416723)
chr1 (36-72)||(29833424-29833460)
[»] chr8 (9 HSPs)
chr8 (13-317)||(4876825-4877130)
chr8 (13-317)||(4879153-4879458)
chr8 (13-317)||(24519199-24519505)
chr8 (36-317)||(36379511-36379792)
chr8 (36-317)||(36377226-36377507)
chr8 (36-317)||(21268166-21268454)
chr8 (13-72)||(21268478-21268540)
chr8 (36-72)||(36379816-36379852)
chr8 (36-72)||(36377531-36377567)
[»] chr5 (15 HSPs)
chr5 (36-315)||(37207731-37207999)
chr5 (36-317)||(11849963-11850232)
chr5 (36-317)||(11852221-11852490)
chr5 (37-317)||(22600772-22601041)
chr5 (36-317)||(23164300-23164565)
chr5 (114-317)||(37215400-37215592)
chr5 (36-317)||(1779263-1779550)
chr5 (13-72)||(37207645-37207707)
chr5 (177-268)||(21743622-21743712)
chr5 (36-72)||(23164589-23164625)
chr5 (211-251)||(1779181-1779221)
chr5 (36-72)||(22600711-22600747)
chr5 (271-317)||(21743705-21743751)
chr5 (36-72)||(11850256-11850292)
chr5 (36-72)||(11852514-11852550)
[»] chr2 (14 HSPs)
chr2 (36-317)||(31486742-31487023)
chr2 (36-317)||(31489026-31489307)
chr2 (121-296)||(29801924-29802096)
chr2 (177-317)||(42275602-42275739)
chr2 (177-317)||(42277828-42277965)
chr2 (101-251)||(34576700-34576860)
chr2 (114-251)||(23859931-23860077)
chr2 (257-317)||(5164197-5164256)
chr2 (271-317)||(8995116-8995162)
chr2 (36-72)||(31486682-31486718)
chr2 (36-72)||(31488966-31489002)
chr2 (276-317)||(15730012-15730053)
chr2 (121-179)||(8995229-8995287)
chr2 (212-253)||(8995169-8995210)
[»] scaffold0599 (1 HSPs)
scaffold0599 (140-317)||(1579-1755)
[»] chr3 (6 HSPs)
chr3 (177-317)||(4530835-4530974)
chr3 (183-317)||(4533138-4533271)
chr3 (98-251)||(18966221-18966374)
chr3 (102-177)||(1701104-1701179)
chr3 (36-81)||(39578242-39578287)
chr3 (120-176)||(8535522-8535578)
[»] scaffold0050 (2 HSPs)
scaffold0050 (98-248)||(29261-29410)
scaffold0050 (98-268)||(31574-31744)
[»] scaffold0008 (2 HSPs)
scaffold0008 (254-317)||(88422-88485)
scaffold0008 (13-74)||(73080-73144)
[»] chr6 (1 HSPs)
chr6 (36-243)||(21199148-21199374)
[»] scaffold1361 (1 HSPs)
scaffold1361 (222-317)||(1-94)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 42468790 - 42468485
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 109  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  42468790 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcactaggg 42468691  T
Q  110 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42468690 aagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 42468591  T
Q  210 ccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 309  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42468590 ccttcctagagtagtataaataaggctcaccatctagtgttttgg--atactgaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 42468493  T
Q  310 agaatatt 317  Q
    ||||||||    
T  42468492 agaatatt 42468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 42471119 - 42470814
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 109  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  42471119 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcactaggg 42471020  T
Q  110 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42471019 aagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 42470920  T
Q  210 ccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 309  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42470919 ccttcctagagtagtataaataaggctcaccatctagtgttttgg--atactgaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 42470822  T
Q  310 agaatatt 317  Q
    ||||||||    
T  42470821 agaatatt 42470814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 45162038 - 45162318
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  45162038 gaataatatagaagtctttagaatactagggaataataagaaagctactagacactactaaataagcactagggaagtctttacttttctagatccttct 45162137  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  45162138 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggc 45162237  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  45162238 tcaccacctagtgtttt-ggcatactcaagcatcatcaaacattgaatcattcaagtaatataacttttctttgagaatatt 45162318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 45166930 - 45167210
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  45166930 gaataatatagaagtctttagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtctttacttttctagatccttct 45167029  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  45167030 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggc 45167129  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  45167130 tcaccacctagtgtttt-ggcatactcaagcatcatcaaacattgaatcattcaaataatataacttttttttaagaatatt 45167210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 50856086 - 50855817
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50856086 gaataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 50855987  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  50855986 aggcttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggt 50855887  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||||||            |||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  50855886 tcaccacctagtgttttgg------------atcatcaagcattgaatcattcaagtaatataacttttcctcgagaatatt 50855817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 104 - 317
Target Start/End: Complemental strand, 19429334 - 19429122
Alignment:
Q  104 ctagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaat 203  Q
    ||||||||| ||| ||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  19429334 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaat 19429235  T
Q  204 ggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatata-actt 302  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||| ||| |  ||| ||||| ||  |||||||||||| ||||||||||||||| ||||    
T  19429234 ggagagcctacctagagtagtataaataaggctcaccaccaagtg-tttagatatattcaag-atactcaagcattgaatcattcaagtaatatatactt 19429137  T
Q  303 ttctttgagaatatt 317  Q
    |||||||||||||||    
T  19429136 ttctttgagaatatt 19429122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 13774151 - 13774290
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgtttt-ggcatactgaagcatcatcaagc 13774249  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  13774250 attgaatcattcaagtaatataacttttctttgagaatatt 13774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 8739251 - 8739467
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaa--taagcactagggaagacttaacttttctagatcctt 133  Q
    ||||||| |||| | |||||||||||||  |||||||| | ||| ||||| |||| ||||||  || |||||||||||  |||||  |||||||||||||    
T  8739251 gaataatgtggatgtctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtttctagatcctt 8739349  T
Q  134 ctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataag 233  Q
    |||| | |||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||| |||    
T  8739350 ctagtcatatgaactagagcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctagagttgtataaacaag 8739449  T
Q  234 gctcaccacctagtgttt 251  Q
    ||| |||||| |||||||    
T  8739450 gcttaccaccaagtgttt 8739467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 13776449 - 13776587
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |  |||| ||| |||| | ||||  |  |||||||    
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcaccgctaagtg-tttaggcacattcaa--agaatcaagc 13776545  T
Q  277 attgaagcattcaagtaatataacttttc-tttgagaatatt 317  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  13776546 attgaatcattcaagtaatataacttttcgtttgagaatatt 13776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 43179576 - 43179710
Alignment:
Q  114 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatatttctagttggtaatg 204  Q
    |||||||||| | ||||||||||| | |||| ||||||||||||||||||||| |||||||||         ||||| ||||||||||||||| ||||||    
T  43179576 cttaacttttttggatccttctagtcatatgaactagagtatccatgtctctatacttttctttgtaatcaatgtttgtagatatttctagtttgtaatg 43179675  T
Q  205 gagagccttcctatagtagtataaataaggctcac 239  Q
     ||||  || ||| |||||||||||| ||||||||    
T  43179676 cagagtttttctagagtagtataaattaggctcac 43179710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 45161982 - 45162046
Alignment:
Q  13 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 74  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  45161982 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 45162046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 45166874 - 45166938
Alignment:
Q  13 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 74  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  45166874 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 45166938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 3932574 - 3932853
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3932574 gaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 3932673  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  3932674 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 3932773  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3932774 tcaccatctagtgttttgg--atactcaagcataatcaagcattgaatcattcaagtaatataacttttctttgagaatatt 3932853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 3934813 - 3935092
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3934813 gaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 3934912  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  3934913 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 3935012  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3935013 tcaccatctagtgttttgg--atactcaagcataatcaagcattgaatcattcaagtaatataacttttctttgagaatatt 3935092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 8733819 - 8733541
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  8733819 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggt---cttaacttttctagatccttct 8733723  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  8733722 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaaggagagccttcctagagtagtataaataaggc 8733623  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa-cttttctttgagaatatt 317  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  8733622 tcaccacctagtgtttt-ggcatactcaagaatcatcaagcattgaagcattcaaataatataatcttttctttgagaatatt 8733541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 37 - 317
Target Start/End: Complemental strand, 36464547 - 36464259
Alignment:
Q  37 aataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttcta 136  Q
    |||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  36464547 aataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttgacttttctagatccttcta 36464448  T
Q  137 ggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggct 236  Q
    |  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  36464447 gttttatgtactagagtatccatatctccagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggct 36464348  T
Q  237 caccacctagtgttttgg--------gcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||||          ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||    
T  36464347 caccacctagtgttttggcatactcaagatactcaagcatagtcaagcattgaatcattcaagtaatataacttttctttgagaatatt 36464259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 8414815 - 8414536
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  8414815 gaataatatagaagtctctagaatactagggaataataaggaaactactagacactactaaataagcactagggaagtcttgacttttctagatc-ttct 8414717  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    ||  |||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8414716 agttttatatactaaaatatccatatctctagacttttctttgtttctagatttttctagtttgtaatggagagccttcctagagtagtataaataaggc 8414617  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  8414616 tcaccacctagtgtttt-ggcatactcaagcatattcaagcattgaatcattcaaataatataacttttctttgagaatatt 8414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 19786622 - 19786840
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||| |||||| |||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19786622 gaataatgtggaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 19786721  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  19786722 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 19786821  T
Q  236 tcaccacctagtgttttgg 254  Q
    |||||||||||||||||||    
T  19786822 tcaccacctagtgttttgg 19786840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 19788928 - 19789146
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||| |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19788928 gaataatgtggaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 19789027  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  19789028 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactagagtagtataaataaggc 19789127  T
Q  236 tcaccacctagtgttttgg 254  Q
    |||||||||||||||||||    
T  19789128 tcaccacctagtgttttgg 19789146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 3052059 - 3052341
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataa----tatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatcc 131  Q
    ||||||||| |||| ||||||||||||||  |||||    || | ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  3052059 gaataatatagaagtctctagaatactagataataaataataaggaagctactagacactactaaataagcattagggaagtcttaacttttctagatcc 3052158  T
Q  132 ttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaata 231  Q
    ||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3052159 ttctagttttatgtactagaatatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaata 3052258  T
Q  232 aggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaata 315  Q
    ||||||||||||||||||||| |  ||||||||| ||  |||||||||||||||||||| ||||||||  ||||||||||||||    
T  3052259 aggctcaccacctagtgtttt-gatatactcaagtatactcaagcattgaagcattcaaataatataaactttctttgagaata 3052341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 42678903 - 42678617
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 127  Q
    |||||||||||||| ||||| ||||||| ||||||||| | ||| |||||||||||  |||||||||      |||||||| ||  |||||  |||||||    
T  42678903 gaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcactaggaaaatcttaatgtttctag 42678804  T
Q  128 atccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctat 218  Q
    |||||||||| | ||||  ||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||| |||||| |     
T  42678803 atccttctagtcatatgacctagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcccaa 42678704  T
Q  219 agtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
     |||||||||||||||||||||||| |||||||||         |||    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42678703 ggtagtataaataaggctcaccaccaagtgttttg---------aag---gatcaagcattgaatcattcaagtaatataacttttctttgagaatatt 42678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 8731359 - 8731222
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    |||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||  |||| ||| |||| | | ||  |  |||||||    
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtg-tttaggcacatttaa--agaatcaagc 8731263  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  8731262 attgaatcattcaagtaatataacttttctttgagaatatt 8731222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 28610424 - 28610350
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttt 251  Q
    ||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||| |||||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccaccaagtgttt 28610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 18395337 - 18395451
Alignment:
Q  200 taatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa 299  Q
    ||||| |||||||||||| ||||||||||||||||||||||||  ||||||| |  || | | ||  |   |||||||||||| ||||||||||||||||    
T  18395337 taatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaga-cacattaaaagag--tcaagcattgaatcattcaagtaatataa 18395433  T
Q  300 cttttctttgagaatatt 317  Q
    ||||||||||||||||||    
T  18395434 cttttctttgagaatatt 18395451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 16497049 - 16496999
Alignment:
Q  267 atcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  16497049 atcatcaagcattgaatcatttaagtaatataacttttctttgagaatatt 16496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 16535231 - 16535181
Alignment:
Q  267 atcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  16535231 atcatcaagcattgaatcatttaagtaatataacttttctttgagaatatt 16535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 16630431 - 16630481
Alignment:
Q  267 atcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  16630431 atcatcaagcattgaatcatttaagtaatataacttttctttgagaatatt 16630481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 21769220 - 21769115
Alignment:
Q  208 agccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctt 307  Q
    |||||| ||| |||||||||||||||||||| ||||  ||||||  |||||| ||||||||  |||||||||||| ||||||| |||||  |  ||||||    
T  21769220 agccttactagagtagtataaataaggctcatcaccctgtgttt--ggcatattcaagcat--tcaagcattgaaacattcaaataataacaactttctt 21769125  T
Q  308 tgagaatatt 317  Q
    ||||||||||    
T  21769124 tgagaatatt 21769115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 19094092 - 19094042
Alignment:
Q  129 tccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 179  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgt 19094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 19786860 - 19786920
Alignment:
Q  257 atactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19786860 atactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 19786920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 19789166 - 19789226
Alignment:
Q  257 atactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19789166 atactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 19789226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 3051999 - 3052035
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3051999 gaataatatggaagactctagaatactagagaataat 3052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 8414875 - 8414839
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8414875 gaataatatggaagactctagaatactagagaataat 8414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3932518 - 3932583
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatg 75  Q
    ||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||  ||||||||||    
T  3932518 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3932583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3934757 - 3934822
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatg 75  Q
    ||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||  ||||||||||    
T  3934757 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatg 3934822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 36464607 - 36464572
Alignment:
Q  37 aataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||| |||||||    
T  36464607 aataatatggaagactctagaatactagagaataat 36464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 29833400 - 29833122
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29833400 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 29833301  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29833300 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 29833201  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||| |||| | ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29833200 tcaccacctagtgtttt-ggcacattcaa--atcatcaagcattgaatcattcaagtaatataacttttctttgagaatatt 29833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 734903 - 734623
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  734903 gaataatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 734804  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  734803 aggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagaatagtataaataaggc 734704  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||  ||||||||||||||||||||| |||||||||||    
T  734703 tcaccacctagtgttttggtcatactcaag-ataatcaagcattgaatgattcaagtaatataacttttccttgagaatatt 734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 2404152 - 2403881
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  2404152 gaataatatagaagtctctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttct 2404053  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||     
T  2404052 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctagagtagtataaataaggt 2403953  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa-cttttctttgagaatatt 317  Q
    ||||||| ||||||||||           |||||||||||||| ||| ||||||| ||||||||  |||||||||||||||||    
T  2403952 tcaccacttagtgttttg-----------gcatcatcaagcatagaaacattcaaataatataatattttctttgagaatatt 2403881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 161 - 317
Target Start/End: Original strand, 29833856 - 29834000
Alignment:
Q  161 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||          
T  29833856 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcactacctagtgttttgg------ 29833949  T
Q  261 tcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
          || ||||||||||||| | ||||||||||||||||||||||||||||||||    
T  29833950 ------atgatcaagcattgaatccttcaagtaatataacttttctttgagaatatt 29834000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 317
Target Start/End: Complemental strand, 8933878 - 8933595
Alignment:
Q  40 aatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctagatcc 131  Q
    |||||||||| ||||| ||||||| ||||||||| | ||| || ||||||||  |||||||||      |||||||| ||  |||||  |||||||||||    
T  8933878 aatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaagcactaggaaaatcttaatgtttctagatcc 8933779  T
Q  132 ttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctatagta 222  Q
    |||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||| |||||||| ||||    
T  8933778 ttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcctagagta 8933679  T
Q  223 gtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||||||  |||||||||        ||||    ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  8933678 gtataaataaggctcaccactaagtgttttg--------caag---aatcaagcattgaatcattcaagtaatataacttttctttgaaaatatt 8933595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 10911352 - 10911489
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||  |||| ||| |||| | ||||  |  |||||||    
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccactaagtg-tttaggcacattcaa--agaatcaagc 10911448  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10911449 attgaatcattcaagtaatataacttttctttgagaatatt 10911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 10909108 - 10909246
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||  |||| ||| |||| | ||||  |  |||||||    
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtg-tttaggcacattcaa--agaatcaagc 10909204  T
Q  277 attgaagcattcaagtaatataacttttc-tttgagaatatt 317  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  10909205 attgaatcattcaagtaatataacttttcgtttgagaatatt 10909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 2410136 - 2410003
Alignment:
Q  174 ctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatca 273  Q
    ||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||           |||||||||    
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------gcatcatca 2410048  T
Q  274 agcattgaagcattcaagtaatataa-cttttctttgagaatatt 317  Q
    ||||| ||| ||||||| ||||||||  |||||||||||||||||    
T  2410047 agcatagaaacattcaaataatataatattttctttgagaatatt 2410003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 13011698 - 13011835
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||| |||||  ||||| |||||||||||| ||||||||||||||||||||||||  |||| ||| | || | ||||  |  |||||||    
T  13011698 tgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccactaagtg-tttagacacattcaa--agaatcaagc 13011794  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  13011795 attgaatcattcaaataatataacttttctttgagaatatt 13011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 18353733 - 18353889
Alignment:
Q  100 agcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctct--agacttttctttgtttctagatatttctagtt 197  Q
    ||||||||| ||  |||| ||||||||||||||||||| | |||| |||||||||||||||||| |     ||  ||  ||||||||||| |||||| ||    
T  18353733 agcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtcttttatttctaatcaatgtttctagatctttctattt 18353832  T
Q  198 ggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgg 254  Q
     ||||||  |||| || ||| |||||||||| || |||||||| || ||||||||||    
T  18353833 tgtaatgtggagcattactagagtagtataattagggctcacctccaagtgttttgg 18353889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 734963 - 734927
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  734963 gaataatatggaagactctagaatactagggaataat 734927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 2416723 - 2416660
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaata 99  Q
    ||||||||| |||  ||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  2416723 gaataatatagaactctctagaatactagggaataataaggaagctactagatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 29833460 - 29833424
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29833460 gaataatatggaagactctagaatactagagaataat 29833424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 4876825 - 4877130
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 109  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  4876825 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactaggg 4876924  T
Q  110 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 209  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4876925 aagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 4877024  T
Q  210 ccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 309  Q
    |||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| || |||||||||||||  ||||||||||||||||||||| |||    
T  4877025 ccttcctagagtagtataaataaggctcaccatctagtgtttt-gacatactcaag-ataatcaagcattgaatgattcaagtaatataacttttccttg 4877122  T
Q  310 agaatatt 317  Q
    ||||||||    
T  4877123 agaatatt 4877130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 4879153 - 4879458
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 109  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||||    
T  4879153 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactaggg 4879252  T
Q  110 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 209  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4879253 aagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagag 4879352  T
Q  210 ccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 309  Q
    |||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| || |||||||||||||  ||||||||||||||||||||| |||    
T  4879353 ccttcctagagtagtataaataaggctcaccatctagtgtttt-gacatactcaag-ataatcaagcattgaatgattcaagtaatataacttttccttg 4879450  T
Q  310 agaatatt 317  Q
    ||||||||    
T  4879451 agaatatt 4879458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 24519505 - 24519199
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactaggg 109  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| | ||| ||| ||| |||||||||||||||||||||    
T  24519505 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcactaggg 24519406  T
Q  110 aagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 209  Q
    ||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  24519405 aagtcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagag 24519306  T
Q  210 ccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttg 309  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |    
T  24519305 ccttcctagagtagtataaataaggctcaccatctagtgtttt-ggcatactgaagcataatcaagcattgaatcattcaagtaatataacttttcttag 24519207  T
Q  310 agaatatt 317  Q
    ||||||||    
T  24519206 agaatatt 24519199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 36379792 - 36379511
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36379792 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 36379693  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  36379692 aggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 36379593  T
Q  236 tcaccacctag-tgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| | |||||||| |||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  36379592 tcaccacctgggtgttttgg-catactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 36379511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 36377507 - 36377226
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36377507 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 36377408  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||  ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  36377407 aggcttatgtactagagtatccatatctctgaacttttctttgttttcagatatttctactttgtaatggagagccttcctagagtagtataaataaggc 36377308  T
Q  236 tcaccacct-agtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| |||||||| |||||||||||  || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  36377307 tcaccacctaagtgtttt-ggcatactcaa-aataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 36377226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 21268454 - 21268166
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  21268454 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaa-actagggaagtcttgacttttctagatccttct 21268356  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    ||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  21268355 agttttatgtactaaagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 21268256  T
Q  236 tcaccacctagtgttttgg--------gcatactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    |||| ||||||||||| ||          ||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  21268255 tcactacctagtgtttaggcataatccaaatactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 21268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 21268540 - 21268478
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||    
T  21268540 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactagagaataat 21268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 36379852 - 36379816
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  36379852 gaataatatggaagactctagaatactagggaataat 36379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 36377567 - 36377531
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36377567 gaataatatggaagactctagaatactaaggaataat 36377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 37207731 - 37207999
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37207731 gaataatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 37207830  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37207831 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 37207930  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa-cttttctttgagaata 315  Q
    |||||||||||||||||            |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  37207931 tcaccacctagtgtttt------------gcatcatcaagcattgaagcattcaaataatataatcttttctttgagaata 37207999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 11850232 - 11849963
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11850232 gaataatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaataagcactagggaagtcttaaattttctagatccttct 11850133  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11850132 aggcttatgtacaagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 11850033  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||||||            |||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11850032 tcaccacctagtgttttgg------------atcatcaagcattgaatcattcaaataatataacttttctttgagaatatt 11849963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 11852490 - 11852221
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | ||||||||||||  ||||||    
T  11852490 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcataacttttctaggaccttct 11852391  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11852390 aggcttatgtactagagtatccatatctctagacttttatttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 11852291  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||||||||||            ||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  11852290 tcaccacctagtgttttgg------------atcgtcaagcattgaatcattcaagtaatataacttttctttgagaatatt 11852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 317
Target Start/End: Original strand, 22600772 - 22601041
Alignment:
Q  37 aataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttcta 136  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22600772 aataatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaataagcactagggaagtcttaacttttctagatccttcta 22600871  T
Q  137 ggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggct 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  22600872 ggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagtcttgctaaagtagtataaataaggct 22600971  T
Q  237 caccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa-cttttctttgagaatatt 317  Q
    ||||||||||||||||||            |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  22600972 caccacctagtgttttgg------------atcatcaagcattgaagcattcaaataatataatcttttctttgagaatatt 22601041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 23164565 - 23164300
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23164565 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaacactagggaagtcttaacttttctagatccttct 23164466  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23164465 aggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggc 23164366  T
Q  236 tcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
     ||||||||||||||||||  ||              |||||||||| ||||||||||||||||||||||||||||||||||    
T  23164365 ccaccacctagtgttttgg--at--------------aagcattgaatcattcaagtaatataacttttctttgagaatatt 23164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 317
Target Start/End: Original strand, 37215400 - 37215592
Alignment:
Q  114 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagcctt 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  37215400 cttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagagcctt 37215499  T
Q  214 cctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataa-cttttctttgaga 312  Q
    |||| |||||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  37215500 cctagagtagtataaataaggctcaccacatagtgtttt------------gcatcatcaagcattgaagcattcaaataatataatcttttctttgaga 37215587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 1779550 - 1779263
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 127  Q
    ||||||||| |||| ||||| ||||||| ||||||||| | ||| |||||||||||  |||||||||      |||||||  ||  |||||  |||||||    
T  1779550 gaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaagcactagaaaaatcttaatgtttctag 1779451  T
Q  128 atccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcctat 218  Q
    |||||||||| | |||| |||||||||||||||| ||||| | |||||||||         ||||||||| |||||||| |||||| ||||||||||||     
T  1779450 atccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagagccttcctag 1779351  T
Q  219 agtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||| ||||||||||||||||||| | |||||||||    ||       |  |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  1779350 agtggtataaataaggctcaccaacaagtgttttg----ta-------aaaatcaagtattgaatcattcaagtaatataacttttctttgagaatatt 1779263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 37207645 - 37207707
Alignment:
Q  13 aatatggaagtctctagaatggtgaa---taatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||    
T  37207645 aatatggaagtctctagaatgatgaagaataatatggaagactctagaatactagggaataat 37207707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 21743622 - 21743712
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcat 268  Q
    ||||| ||||||||| ||||| ||| || |||||||||||| |||||||||||||||  |||||||| ||||  || |||||||||||||||    
T  21743622 tgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaataagattcaccaccaagtg-gttaggcatactcaagcat 21743712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 23164625 - 23164589
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  23164625 gaataatatggaagactctagaatactagggaataat 23164589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 1779221 - 1779181
Alignment:
Q  211 cttcctatagtagtataaataaggctcaccacctagtgttt 251  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  1779221 cttcctagagtagtataaataaggctcaccaccaagtgttt 1779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 22600711 - 22600747
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||||||||| |||||||||||    
T  22600711 gaataatatggaagactctagaatattagggaataat 22600747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 21743705 - 21743751
Alignment:
Q  271 tcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||| |||||| ||||||||  ||||||||||||||||    
T  21743705 tcaagcattgaagaattcaaataatataaactttctttgagaatatt 21743751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 11850292 - 11850256
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  11850292 gaataatatggaagactcttgaatactatggaataat 11850256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 11852550 - 11852514
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||| | ||||||    
T  11852550 gaataatatggaagactctagaatactatgaaataat 11852514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 31486742 - 31487023
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31486742 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttct 31486841  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  31486842 aggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctagagtagtataaataaggc 31486941  T
Q  236 tcaccacct-agtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| |||||||| |||||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  31486942 tcaccacctaagtgtttt-ggcatactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 31487023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 31489026 - 31489307
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacactactaaataagcactagggaagacttaacttttctagatccttct 135  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  31489026 gaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttagcttttctagatccttct 31489125  T
Q  136 aggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggc 235  Q
    | |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  31489126 aagcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctaaagtagtataaataaggc 31489225  T
Q  236 tcaccacct-agtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataactttt-ctttgagaatatt 317  Q
    ||||||||| |||||||| |||||||||||| || |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  31489226 tcaccacctaagtgtttt-ggcatactcaag-ataatcaagcattgaatgattcaagtaatataacttttcctttgagaatatt 31489307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 29801924 - 29802096
Alignment:
Q  121 tttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatag 220  Q
    |||||| |||||||||| | |||| |||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||    
T  29801924 tttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttgtagatatttctagtttgtaatggggagtcttcctagag 29802023  T
Q  221 tagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaata 296  Q
    ||||||||||||||||||||||| |||| ||| |||||| ||||||||  | ||| ||| |||||||||| |||||    
T  29802024 tagtataaataaggctcaccaccaagtg-tttaggcatagtcaagcat--tgaagaattcaagcattcaaataata 29802096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 42275739 - 42275602
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||  |||| ||| |||| | ||||  |  ||||||     
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtg-tttaggcacattcaa--agaatcaagt 42275643  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42275642 attgaatcattcaagtaatataacttttctttgagaatatt 42275602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 42277965 - 42277828
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||  |||| ||| |||| | ||||  |  |||||||    
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccactaagtg-tttaggcacattcaa--agaatcaagc 42277869  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42277868 attgaatcattcaagtaatataacttttctttgagaatatt 42277828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 34576860 - 34576700
Alignment:
Q  101 gcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatattt 191  Q
    ||||||| |||  |||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||         |||||||||||||||    
T  34576860 gcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatattt 34576761  T
Q  192 ctagttggtaatggagagccttcct-atagtagtataaataaggctcaccacctagtgttt 251  Q
    |||||| |||||| ||||||||||| | | ||||||||||||||||||||| | |||||||    
T  34576760 ctagtttgtaatgtagagccttcctaagattagtataaataaggctcaccatcaagtgttt 34576700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 23859931 - 23860077
Alignment:
Q  114 cttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaatg 204  Q
    |||| ||||||||||||||||||| |||||| |||||||||| ||||| ||||| | |||||||||         ||||||||| |||||||| ||||||    
T  23859931 cttagcttttctagatccttctagtcttatgaactagagtatgcatgtttctaggcctttctttgtaatcaatatttctagataattctagtttgtaatg 23860030  T
Q  205 gagagccttcctatagtagtataaataaggctcaccacctagtgttt 251  Q
     |||||||||||| ||||||||||||||||||||||||| |||||||    
T  23860031 tagagccttcctagagtagtataaataaggctcaccaccaagtgttt 23860077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 5164256 - 5164197
Alignment:
Q  257 atactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164256 atactcaag-ataatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 5164197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 8995162 - 8995116
Alignment:
Q  271 tcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  8995162 tcaagcattgaatcattcaagtaatataacttttctttgagaatatt 8995116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 31486682 - 31486718
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  31486682 gaataatatggaagactctagaatactagggaataat 31486718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 31488966 - 31489002
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataat 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  31488966 gaataatatggaagactctagaatactagggaataat 31489002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 15730012 - 15730053
Alignment:
Q  276 cattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  15730012 cattgaatcattcaagtaatataacttttatttgagaatatt 15730053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 8995287 - 8995229
Alignment:
Q  121 tttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 179  Q
    ||||||||||||||||| | |||| |||||||||||||||  ||||| | |||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtatccatgcttctaggcctttctttgt 8995229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 8995210 - 8995169
Alignment:
Q  212 ttcctatagtagtataaataaggctcaccacctagtgttttg 253  Q
    |||||| ||||||||||||||||||| ||||| |||||||||    
T  8995210 ttcctagagtagtataaataaggctctccaccaagtgttttg 8995169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 140 - 317
Target Start/End: Original strand, 1579 - 1755
Alignment:
Q  140 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  1579 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcac 1678  T
Q  240 cacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  1679 cacctagtgtttt-ggcatactcaagcatcatcaagcattgaatcattcaagtaatataacttttctttgaggatatt 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 4530835 - 4530974
Alignment:
Q  177 tgtttctagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgtttt-ggcatactgaagcatcatcaagc 4530933  T
Q  277 attgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  4530934 attgaatcattcaagtaatataacttttctttgagaatatt 4530974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 4533138 - 4533271
Alignment:
Q  183 tagatatttctagttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaa 282  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgtttt-ggcatactgaagcatcatcaagcattgaa 4533236  T
Q  283 gcattcaagtaatataacttttctttgagaatatt 317  Q
     ||||||||||||||||||||||||||||||||||    
T  4533237 tcattcaagtaatataacttttctttgagaatatt 4533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 18966374 - 18966221
Alignment:
Q  98 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 197  Q
    ||||||||||| ||  |||||  ||||||||||||||||| | || |||||||||||||||| ||||| |||||||||| |||||||||||||||||||     
T  18966374 taagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttggtttctagatatttctagtg 18966275  T
Q  198 ggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttt 251  Q
     || |||||| | ||||||| ||||||||||||||||||||||||| |||||||    
T  18966274 tgtcatggagtgtcttcctagagtagtataaataaggctcaccaccaagtgttt 18966221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 1701104 - 1701179
Alignment:
Q  102 cactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttcttt 177  Q
    ||||||||||  |||||||||||||||||||||||| | |||| | |||| ||||||| | ||||| |||||||||    
T  1701104 cactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 39578242 - 39578287
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagtt 81  Q
    |||| |||||||||||||||||||||||  ||||||| ||||||||    
T  39578242 gaatgatatggaagactctagaatactaaagaataatgtgaaagtt 39578287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 8535522 - 8535578
Alignment:
Q  120 ttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt 176  Q
    |||| ||||||||||||| | |||  |||| ||||||||| ||||||||||||||||    
T  8535522 ttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 29261 - 29410
Alignment:
Q  98 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 197  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||  |||||| |||||||||||||||| |||||||||||||| |||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttctt-gtttctagatatttttagtt 29359  T
Q  198 ggtaatggagagccttcctatagtagtataaataaggctcaccacctagtg 248  Q
     ||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  29360 tgtaatggagagtcttcctagagtagtataaataaggctcaccaccaagtg 29410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 31574 - 31744
Alignment:
Q  98 taagcactagggaagacttaacttttctagatccttctaggcttatgtactagagtatccatgt--ctctagacttttctttgtttctagatatttctag 195  Q
    ||||||||||||||  |||||  ||||||||||||||||| | |||||||||||  |||||| |  ||||||||||||||| |||| |||||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt-gtttttagatatttctag 31672  T
Q  196 ttggtaatggagagccttcctatagtagtataaataaggctcaccacctagtgttttgggcatactcaagcat 268  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||| |||| | | |||||||||||||||    
T  31673 tttgtaatggagagccttcctagagtagtataaataaggctcaccaccaagtg-tgtaggcatactcaagcat 31744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 88422 - 88485
Alignment:
Q  254 ggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttctttgagaatatt 317  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  88422 ggcatactcaagcatcatcaaacattgaatcattcaagtaatataacttttctttgagaatatt 88485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 73080 - 73144
Alignment:
Q  13 aatatggaagtctctagaatggt---gaataatatggaagactctagaatactagggaataatat 74  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||| ||||  |||||||||    
T  73080 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatat 73144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 243
Target Start/End: Original strand, 21199148 - 21199374
Alignment:
Q  36 gaataatatggaagactctagaatactagggaataatatgaaagttactagacact--actaaataa------gcactagggaagacttaacttttctag 127  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||||  |||||||||      |||||||  ||  |||||  |||||||    
T  21199148 gaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttctag 21199247  T
Q  128 atccttctaggcttatgtactagagtatccat--gtctctagacttttctttgt---------ttctagatatttctagttggtaatggagagccttcct 216  Q
    |||||||||| | |||| ||| ||||||||||  |||||||| | |||| ||||         |||||||||||||||||| |||||| | |||||||||    
T  21199248 atccttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttcct 21199347  T
Q  217 atagtagtataaataaggctcaccacc 243  Q
      |||| ||||||||||| ||||||||    
T  21199348 ggagtactataaataaggttcaccacc 21199374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 317
Target Start/End: Original strand, 1 - 94
Alignment:
Q  222 agtataaataaggctcaccacctagtgttttgggcatactcaagcatcatcaagcattgaagcattcaagtaatataacttttc-tttgagaatatt 317  Q
    |||||||||||||||||||||  ||||||| || || | ||||  |  ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  1 agtataaataaggctcaccactaagtgtttagg-cacattcaaaga--atcaagcattgaatcattcaagtaatataacttttcgtttgagaatatt 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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