View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_21 (Length: 241)
Name: NF16480_high_21
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_21 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1839 - 2078
Alignment:
| Q |
1 |
gattcaaatcccaatgcctatattctcccaccactgccttacactcagtaataacacaagcaagttggcaactatttttgaccaaatccaaacctatggc |
100 |
Q |
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| T |
1839 |
gattcaaatcccaatgcctatattttcccaccactgccttacactcagtaataacataagcaagttggcaactatttttgaccaaatccaaacctatggc |
1938 |
T |
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| Q |
101 |
catgggtgccagaaaatattgatttactgctccaaactgacatacatatgatgaaattactgagatactgtataagaaagtgatggaaatcatgagaaat |
200 |
Q |
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| T |
1939 |
catgggtgccagaaaatattgattcactgctccaaactgacatacatatgatgaaattacagagatactctataagaaagtgatggaaatcatgagaaat |
2038 |
T |
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| Q |
201 |
aaaggatgctatgaaggaaaaaatgtgtgagtgagtgtgt |
240 |
Q |
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|||||||| |||||| | |||||||||||||||||| |
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| T |
2039 |
aaaggatgttatgaaaatgtatatgtgtgagtgagtgtgt |
2078 |
T |
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