View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_23 (Length: 230)
Name: NF16480_high_23
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16656340 - 16656569
Alignment:
| Q |
1 |
tttttcattcttgtttggttgttgatggtgggctttgggtttggggtaaaggtgatggtggaagattagggttaggtcatgagagttcgatgtttgttcc |
100 |
Q |
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| T |
16656340 |
tttttcattcttgtttggttgttgatggtgggctttgggtctggggtaaaggtgatggtggaagattagggttaggtcatgagagttcgatgtttgttcc |
16656439 |
T |
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| Q |
101 |
tactttgaatcctcatctggagaatgtgaagtctgttgctcttggtgggttgcattctgttgcacttacttctgcaggtgaagtttttacatggtcagaa |
200 |
Q |
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| T |
16656440 |
tactttgaatcctcatctggagaatgtgaagtctgttgctcttggtgggttgcattctgttgcacttacttctgctggtgaagtttttacatggtcagaa |
16656539 |
T |
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| Q |
201 |
tcacttcaagcttaccttaatttaatgcat |
230 |
Q |
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| T |
16656540 |
tcacttcaagcttaccttaatttaatgcat |
16656569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17630700 - 17630929
Alignment:
| Q |
1 |
tttttcattcttgtttggttgttgatggtgggctttgggtttggggtaaaggtgatggtggaagattagggttaggtcatgagagttcgatgtttgttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17630700 |
tttttcattcttgtttggttgttgatggtgggctttgggtctggggtaaaggtgatggtggaagattagggttaggtcatgagagttcgatgtttgttcc |
17630799 |
T |
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| Q |
101 |
tactttgaatcctcatctggagaatgtgaagtctgttgctcttggtgggttgcattctgttgcacttacttctgcaggtgaagtttttacatggtcagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17630800 |
tactttgaatcctcatctggagaatgtgaagtctgttgctcttggtgggttgcattctgttgcacttacttctgctggtgaagtttttacatggtcagaa |
17630899 |
T |
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| Q |
201 |
tcacttcaagcttaccttaatttaatgcat |
230 |
Q |
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| T |
17630900 |
tcacttcaagcttaccttaatttaatgcat |
17630929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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