View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_3 (Length: 529)
Name: NF16480_high_3
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 24 - 514
Target Start/End: Complemental strand, 40614061 - 40613570
Alignment:
| Q |
24 |
ttcacgtgcctttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagctgcaacgtcaacg |
123 |
Q |
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| T |
40614061 |
ttcacgtgcctttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagctgcaacgtcaacg |
40613962 |
T |
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| Q |
124 |
cttgacactcttaacaacgtggaacaaacgaaactccgagaaattgcagtacaa-gaaaaaccacaagatgttcctgaagatcttttctatgttcttcaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40613961 |
cttgacactcttaacaacgtggaacaaacgaaactccaagaaattgcagtacaaagaaaaaccacaagatgttcctgaagatcttttctatgttctccaa |
40613862 |
T |
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| Q |
223 |
caactcaagaacactatggttctttttcaaagtcatcaacagagtaaagaagctcttcaccttcttcaacttgataagatgtttcaaacctttggtgatc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40613861 |
caactcaagaacactatggttctttttcaaagtcatcaacagagaaaagaagctcttcaccttcttcaacttgataagatgtttcaaacctttggtgatc |
40613762 |
T |
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| Q |
323 |
ttattcaaagagcttctgaattggtttctcctgatgaagatagaaagataaagaaacttcccactttatatgaagatgtggttaactatgaaaaggagga |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40613761 |
ttattcaaagagcttctgaattggtttctcctgatgaagataggaagataaagaaacttcccactttatatgaagatgtggttaactatgaaaaggagga |
40613662 |
T |
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| Q |
423 |
agaggaagagccacaaaagagtcaagattttgaaggtgaaaagggttccttagtgcataaaccgtttttgttaacaggttagtttaataatt |
514 |
Q |
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| T |
40613661 |
agaggaagagccacaaaagagtcaagattttgaaggtgaaaagggttccttagtgcataaaccgtttttgttaacaggttagtttaataatt |
40613570 |
T |
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