View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_high_4 (Length: 517)
Name: NF16480_high_4
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 257 - 503
Target Start/End: Original strand, 15363906 - 15364155
Alignment:
| Q |
257 |
ttgtagctttctcttcaacatcgttggccttatctgttggaatcatttgacttctct---ttgcatcatcgtcgcaactttcttcttgcagtgaaacttt |
353 |
Q |
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| T |
15363906 |
ttgtagctttctcttcaacgtctttggccttatccgttggaatcattggacttctctcttttgcatcatcaccgcaactttcttcttgcagcaaaacttt |
15364005 |
T |
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| Q |
354 |
ttcaagttccatagttgcatcttcaatattcagtcctgaacctttctcttgaacatcttcctcttcagcttttggatgcatttgattctccatatttatg |
453 |
Q |
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| T |
15364006 |
ttcaagttccatagttgcatcttcaatattcagtcctgaacctttctcttgaacatcttcctcttcagcttttggatgcatttgattctccatatttatg |
15364105 |
T |
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| Q |
454 |
tcactttcatgatcatgagtatatccttctgatgaatcattttcaagctt |
503 |
Q |
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| T |
15364106 |
tcactttcatgatcatgagtatatccttccaatgaatcaatttcaagctt |
15364155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 15362553 - 15362772
Alignment:
| Q |
33 |
tttatcttcgacttcaagtacacttgttttatcatcataactcaatcctgcagctatttcatgatcatctttgcctttcgaaaactcattttcaagtgaa |
132 |
Q |
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| T |
15362553 |
tttatcttcatcttcaagttcacttgttttaccatcagaactcaaccctgcagctatttcatgatcat---tgcttttcgataaatcattttcaagtgaa |
15362649 |
T |
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| Q |
133 |
tttcttgtatgttcagaaaccattcctttgtctttctcctcgacatcttcagattcatcaattggatgcatttgattctttgtatttatttcactttcat |
232 |
Q |
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| T |
15362650 |
cttcttgtatgttcagaatccattcctatagctttctcctcaacatcttcagcttcatcagttatatgcatttgattctccatatccatgtcactttcat |
15362749 |
T |
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| Q |
233 |
taccatctccttccaatgaatca |
255 |
Q |
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| T |
15362750 |
tagtatctccttccaatgaatca |
15362772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 15363630 - 15363871
Alignment:
| Q |
20 |
tatcttctcgaggtttatcttcgacttcaagtacacttgttttatcatcataactcaatcctgcagctatttcatgatcat--ctt-tgcctttcgaaaa |
116 |
Q |
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| T |
15363630 |
tatcttcttgagattcatcttgaacatcaagttcacttgttttatcatcataagccaaccctgcagctatttcctgatcataacttgtgcccttcagtaa |
15363729 |
T |
|
| Q |
117 |
ctcattttcaagtgaatttcttgtatgttcagaaaccattcctttgtctttctcctcgacatcttcagattcatcaattggatgcatttgattctttgta |
216 |
Q |
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| T |
15363730 |
atcattttcaattgaacttcttgtatgttcagaagcccctcctacagctttctcctcagcatattcagcttcatcagttggatgcatttgattctccata |
15363829 |
T |
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| Q |
217 |
tttatttcactttcattaccatctccttccaatgaatcaatt |
258 |
Q |
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| T |
15363830 |
tatatgtcacttttattagcatctccttcaaatgaatcaatt |
15363871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 465
Target Start/End: Original strand, 15362813 - 15363021
Alignment:
| Q |
260 |
tagctttctcttcaacatcgttggccttatctgttggaatcatttgactt--ctctttg-catcatcgtcgcaactttcttcttgcagtgaaactttttc |
356 |
Q |
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||||||||||||||||||| ||| ||| ||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| ||||||||| | |
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| T |
15362813 |
tagctttctcttcaacatctttgacctcatctgttggaatcatttgagtgtcctctttcacatcatcgtcgtgactttcttcttgcatcgaaacttttcc |
15362912 |
T |
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| Q |
357 |
aagttccatagttgcatcttcaatattcagtcctgaacctttctcttgaacatcttcctcttcagcttttggatgcatttgattctccatatttatgtca |
456 |
Q |
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| T |
15362913 |
aagttcagttgttgcatcttcagagtccaatcctttagctttctcctcaatatcttcctcttcggcttttggatgaatttgattttccatacttatgtca |
15363012 |
T |
|
| Q |
457 |
ctttcatga |
465 |
Q |
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| T |
15363013 |
cttgcatga |
15363021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 15363807 - 15363842
Alignment:
| Q |
425 |
ttggatgcatttgattctccatatttatgtcacttt |
460 |
Q |
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| T |
15363807 |
ttggatgcatttgattctccatatatatgtcacttt |
15363842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 15364182 - 15364290
Alignment:
| Q |
257 |
ttgtagctttctcttcaacatcgttggccttatctgttggaatcatttgac--ttctctttg-catcatcgtcgcaactttcttcttgcagtgaaacttt |
353 |
Q |
| |
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||||| |||| ||||||||||| ||||||| ||||||| ||||||||||| |||||||| ||||||| || |||||||||||| || ||||| || |
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| T |
15364182 |
ttgtatctttttcttcaacatctttggcctcatctgttagaatcatttgagatttctctttcacatcatcaccgtgactttcttcttgtagcgaaacatt |
15364281 |
T |
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| Q |
354 |
ttcaagttc |
362 |
Q |
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| T |
15364282 |
tgcaagttc |
15364290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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