View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16480_high_6 (Length: 485)

Name: NF16480_high_6
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16480_high_6
NF16480_high_6
[»] chr4 (17 HSPs)
chr4 (1-468)||(6839612-6840078)
chr4 (212-329)||(28031523-28031640)
chr4 (280-328)||(2536983-2537031)
chr4 (251-328)||(9034943-9035020)
chr4 (280-329)||(12274267-12274316)
chr4 (251-328)||(26006089-26006166)
chr4 (207-295)||(652912-653000)
chr4 (280-328)||(22359245-22359293)
chr4 (410-461)||(6755637-6755688)
chr4 (251-328)||(26429196-26429273)
chr4 (251-328)||(35853217-35853294)
chr4 (285-329)||(19396169-19396213)
chr4 (251-329)||(54552663-54552741)
chr4 (251-328)||(17423826-17423903)
chr4 (280-317)||(25058319-25058356)
chr4 (280-328)||(33846395-33846443)
chr4 (280-328)||(52759131-52759179)
[»] chr3 (10 HSPs)
chr3 (166-328)||(51951909-51952071)
chr3 (251-328)||(8457955-8458032)
chr3 (244-324)||(19396808-19396888)
chr3 (280-328)||(26400263-26400311)
chr3 (280-328)||(39383539-39383587)
chr3 (280-320)||(43018367-43018407)
chr3 (167-258)||(7514969-7515060)
chr3 (172-235)||(31637603-31637666)
chr3 (254-339)||(7622696-7622781)
chr3 (284-328)||(51191876-51191920)
[»] chr1 (9 HSPs)
chr1 (186-299)||(31592302-31592415)
chr1 (273-323)||(11080021-11080071)
chr1 (213-308)||(33816839-33816934)
chr1 (213-308)||(33876309-33876404)
chr1 (106-161)||(45309101-45309156)
chr1 (280-317)||(26347429-26347466)
chr1 (227-331)||(3295287-3295391)
chr1 (172-235)||(35322353-35322416)
chr1 (280-329)||(25070829-25070878)
[»] chr5 (8 HSPs)
chr5 (251-328)||(36978765-36978842)
chr5 (166-328)||(29242112-29242274)
chr5 (284-328)||(16007136-16007180)
chr5 (172-235)||(33305027-33305090)
chr5 (280-329)||(4052929-4052978)
chr5 (280-329)||(39861013-39861062)
chr5 (280-328)||(9609506-9609554)
chr5 (280-328)||(30796802-30796850)
[»] scaffold0450 (1 HSPs)
scaffold0450 (252-328)||(5350-5426)
[»] scaffold0200 (1 HSPs)
scaffold0200 (251-329)||(26941-27019)
[»] chr7 (11 HSPs)
chr7 (255-328)||(40187421-40187494)
chr7 (166-325)||(3962301-3962460)
chr7 (250-328)||(4595034-4595112)
chr7 (166-328)||(25611367-25611529)
chr7 (224-298)||(34899100-34899174)
chr7 (251-328)||(9360800-9360877)
chr7 (280-328)||(8150859-8150907)
chr7 (250-320)||(5866274-5866344)
chr7 (251-328)||(6596204-6596281)
chr7 (251-320)||(23362347-23362416)
chr7 (280-328)||(14160551-14160599)
[»] chr2 (10 HSPs)
chr2 (251-320)||(22605976-22606045)
chr2 (277-328)||(23769779-23769830)
chr2 (166-320)||(10213791-10213945)
chr2 (171-216)||(26999276-26999321)
chr2 (213-264)||(16349529-16349580)
chr2 (170-216)||(26423240-26423286)
chr2 (251-328)||(11616689-11616766)
chr2 (251-328)||(45085989-45086066)
chr2 (212-308)||(32025539-32025635)
chr2 (237-293)||(38284367-38284423)
[»] chr8 (9 HSPs)
chr8 (280-328)||(32282847-32282895)
chr8 (227-338)||(26006771-26006882)
chr8 (166-328)||(5839738-5839900)
chr8 (250-320)||(36531193-36531263)
chr8 (251-328)||(11503073-11503150)
chr8 (270-343)||(31037689-31037762)
chr8 (251-328)||(32578109-32578186)
chr8 (251-328)||(25663563-25663640)
chr8 (284-328)||(10631232-10631276)
[»] scaffold0011 (1 HSPs)
scaffold0011 (249-328)||(58456-58535)
[»] scaffold0360 (1 HSPs)
scaffold0360 (280-329)||(5315-5364)
[»] scaffold0279 (1 HSPs)
scaffold0279 (251-328)||(6771-6848)
[»] scaffold0016 (1 HSPs)
scaffold0016 (251-328)||(187184-187261)
[»] chr6 (9 HSPs)
chr6 (279-320)||(7608564-7608605)
chr6 (171-216)||(34701311-34701356)
chr6 (157-328)||(32957402-32957573)
chr6 (251-320)||(7435628-7435697)
chr6 (251-328)||(34183125-34183202)
chr6 (280-328)||(6192630-6192678)
chr6 (284-320)||(12523681-12523717)
chr6 (284-328)||(29025240-29025284)
chr6 (284-320)||(31797988-31798024)
[»] scaffold0577 (1 HSPs)
scaffold0577 (251-320)||(2211-2280)
[»] scaffold0201 (1 HSPs)
scaffold0201 (284-328)||(20721-20765)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 6840078 - 6839612
Alignment:
Q  1 gacgcgggcattggggaggtgtcaggtattctctctgcccttcaatgggtctgtgatcttcaattggtcaatgccgactccaaaatagtagtttagaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6840078 gacgcgggcattggggaggtgtcaggtattctctctgcccttcaatgggtctgtgatcttcaattggtcaatgcggactccaaaatagtagtttagaaca 6839979  T
Q  101 tctacggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtctactcgcttctgatttagtgaactctgatatgaagttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  6839978 tctacggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtctactcgcttctgatttagtgaactctgatgtaaagttcat 6839879  T
Q  201 tagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacg 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  6839878 tagaagacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctagtttccacatttttattagaattccatcttttatctctacg 6839779  T
Q  301 attattatgaataaaatgcactaagttttcttatgtaaacaaacataattatacccaacacttaattaataagtttaacataaaagttgatgttaatcaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  6839778 attattatgaataaaatgcactaagttttcttatgtaaacaaacataattatacccaacacttaattaataagtttaaaat-aaagttgatgttaatcaa 6839680  T
Q  401 ttagaattattacctaactggttagcagtacgaaatctgtgacataattgaaccaagatggacagaac 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839679 ttagaattattacctaactggttagcagtacgaaatctgtgacataattgaaccaagatggacagaac 6839612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 28031523 - 28031640
Alignment:
Q  212 ccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaa 311  Q
    |||||||| ||| ||||||||||| |||| || ||||||||||||||| |||||  ||||| ||   |||| ||||||||||||||||  ||||| | ||    
T  28031523 ccaatgaagttgatcatagtttagctaggataactccatgtcatgctagttttcgtattttcattcaaatttcatcttgtatctctacttttattttaaa 28031622  T
Q  312 taaaatgcactaagtttt 329  Q
    ||||||| | ||||||||    
T  28031623 taaaatgtattaagtttt 28031640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 2537031 - 2536983
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2537031 attccatcttgtatctctactattattatgaataaaatgcaataagttt 2536983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 9034943 - 9035020
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  9034943 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 9035020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 12274267 - 12274316
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  12274267 attccatcttgtatctctactattattatgaatgaaatgcaataagtttt 12274316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 26006166 - 26006089
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  26006166 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 26006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 652912 - 653000
Alignment:
Q  207 acaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatct 295  Q
    ||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||  ||| || ||||||||  |||||||||  |||||||    
T  652912 acaatccaatgaagttgctcatagtttagctagggtaacttaatgtcatgcttgtttccatatttttatttgaattccataatgtatct 653000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 22359293 - 22359245
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  22359293 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 22359245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 6755688 - 6755637
Alignment:
Q  410 ttacctaactggttagcagtacgaaatctgtgacataattgaaccaagatgg 461  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  6755688 ttacctaactgattagcagtacaaaatcagtgacatcattgaaccaagatgg 6755637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 26429273 - 26429196
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  26429273 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 26429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 35853217 - 35853294
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  35853217 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaattaaatgcaataagttt 35853294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 19396213 - 19396169
Alignment:
Q  285 atcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||    
T  19396213 atcttgtatctctactattattatgaatgaaatgcaataagtttt 19396169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 54552663 - 54552741
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||||||||  ||||| |||  |||||| ||||| |||||||||| | | |||||||||||| ||||||| ||||||||    
T  54552663 gtcatgctagatttcatattcatatcaggattccttcttgtatctttgctattattatgaatgaaatgcaataagtttt 54552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 17423903 - 17423826
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| ||||| |||||| |||| || |||||||    
T  17423903 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattatcatgaatgaaattcaataagttt 17423826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 25058356 - 25058319
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaat 317  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  25058356 attcaatcttgtatctctactattattatgaataaaat 25058319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 33846395 - 33846443
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  33846395 attccatcttgtatttctactattattctgaatgaaatgcaataagttt 33846443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 52759179 - 52759131
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||| ||||||| ||| |||||||||||| ||||||| |||||||    
T  52759179 attccatcgtgtatctatactattattatgaatgaaatgcaataagttt 52759131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 328
Target Start/End: Original strand, 51951909 - 51952071
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||||||||| | ||||||| | | ||| ||| ||| |||| |||||||| | ||||||||||| | ||| || |||  | ||||||||| |||||    
T  51951909 gcttctgatttagtaacctctgatgttaggtttattcgaagacaagccaatgaattcgctcatagttttgctagagtggctttacgtcatgctagttttc 51952008  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    | |||  ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  51952009 atattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 51952071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 8457955 - 8458032
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| |||||| |||  ||| || ||| |||||||||||||||| |||||||||||| ||||||| |||||||    
T  8457955 gtcatgctagttttcatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 8458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 19396808 - 19396888
Alignment:
Q  244 gctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaa 324  Q
    ||||||| |||||||| ||| |  | ||||||  ||||||||||||||||||| || ||||||||||||  ||||||||||    
T  19396808 gctccatatcatgctagtttccgtacttttattcgaattccatcttgtatctcaacaattattatgaatgtaatgcactaa 19396888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 26400263 - 26400311
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||    
T  26400263 attccatattgtatctctactattattatgaatgaaatgcaataagttt 26400311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 39383539 - 39383587
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||    
T  39383539 attccattttgtatctctactattattatgaatgaaatgcaataagttt 39383587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 43018407 - 43018367
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgca 320  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  43018407 attccatcttgtatctctactattattatgaatgaaatgca 43018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 7514969 - 7515060
Alignment:
Q  167 cttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgct 258  Q
    ||||| ||||||| | |||| |||||| ||| ||||| | ||||  || |||| ||||||||||||||| |||| |||||||| ||||||||    
T  7514969 cttctcatttagtaacctcttatatgaggtttattaggagacaagtcactgaagttgctcatagtttagctaggctagctccacgtcatgct 7515060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 31637603 - 31637666
Alignment:
Q  172 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 235  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  31637603 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 31637666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 7622696 - 7622781
Alignment:
Q  254 atgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttttcttatgtaaa 339  Q
    |||||| |||||| |||  ||| || ||| |||||||||||||||| |||||||| ||| ||||||| ||| |||| || ||||||    
T  7622696 atgctagttttcatattcatattaggatttcatcttgtatctctactattattataaatgaaatgcaataaatttttttttgtaaa 7622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 51191920 - 51191876
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||| ||| |||||||||||| ||||||| |||||||    
T  51191920 catcttgtatctgtactattattatgaatgaaatgcaataagttt 51191876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 31592302 - 31592415
Alignment:
Q  186 tgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattcca 285  Q
    |||| ||| ||| ||||| | |||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||| ||  ||||||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagctagggtagctccatgtcatgctagtttccgtattttcattcgaattcca 31592401  T
Q  286 tcttgtatctctac 299  Q
    ||||||||||||||    
T  31592402 tcttgtatctctac 31592415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 11080021 - 11080071
Alignment:
Q  273 tatcagaattccatcttgtatctctacgattattatgaataaaatgcacta 323  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  11080021 tatcaggattccatcttgtatctctacgattattataaatgaaatgcacta 11080071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 33816839 - 33816934
Alignment:
Q  213 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattat 308  Q
    ||||||||||||||||||||||| || ||||| | |||||||||||| |||||| | ||||||   ||| | ||| |||||||||||  |||||||    
T  33816839 caatgaaattgctcatagtttagttaaggtagattcatgtcatgctagttttcataattttattcaaatcctatcatgtatctctactcttattat 33816934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 33876309 - 33876404
Alignment:
Q  213 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattat 308  Q
    ||||||||||||||||||||||| || ||||| | |||||||||||| |||||| | ||||||   ||| | ||| |||||||||||  |||||||    
T  33876309 caatgaaattgctcatagtttagttaaggtagattcatgtcatgctagttttcataattttattcaaatcctatcatgtatctctactcttattat 33876404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 45309101 - 45309156
Alignment:
Q  106 ggtaataagcatggtgtttctgactttagtgcaattatcaatgactacaatcgtct 161  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| ||| |||||    
T  45309101 ggtattaagcatggtgtttctgattttagtgcaattattaatgactgcaaacgtct 45309156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 26347429 - 26347466
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaat 317  Q
    |||||||||||||||||||| |||||||||||||||||    
T  26347429 attccatcttgtatctctactattattatgaataaaat 26347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 3295391 - 3295287
Alignment:
Q  227 atagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagt 326  Q
    ||||||||  |||||||| | ||||||| ||||| || || ||||| ||  ||||| ||||||||||||||||  || || | ||||||||||| |||||    
T  3295391 atagtttatctagggtagtttcatgtcacgctaacttccatattttcattcgaatttcatcttgtatctctactcttgttttaaataaaatgcattaagt 3295292  T
Q  327 tttct 331  Q
    |||||    
T  3295291 tttct 3295287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 35322353 - 35322416
Alignment:
Q  172 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 235  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  35322353 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 35322416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 25070878 - 25070829
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  25070878 attccatcttatatctctaccattattatgaatgaaatgcaataaatttt 25070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 36978765 - 36978842
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| |||||| |||| ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  36978765 gtcatgctagttttcatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 36978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 328
Target Start/End: Complemental strand, 29242274 - 29242112
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||| ||||| | ||||||| | | ||||||| | | |||| |||||||| | |||||||| || | ||| || |||  |  |||||||| ||| |    
T  29242274 gcttctgacttagtaacctctgatgttaggttcattcggagacaagccaatgaagtcgctcatagctttgctagagtggctttacatcatgctagtttcc 29242175  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    | |||| ||| || ||||||| |||||||||||| |||||| ||||| ||||||| |||||||    
T  29242174 atatttatattaggattccatattgtatctctactattattttgaatgaaatgcaataagttt 29242112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 16007180 - 16007136
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||    
T  16007180 catcttgtatctctactattattatgaatgaaatgcaataagttt 16007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 33305090 - 33305027
Alignment:
Q  172 gatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttag 235  Q
    |||||||||||||||||| ||||||||||||| | ||||  |||||   |||||||||||||||    
T  33305090 gatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttag 33305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 4052929 - 4052978
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  4052929 attccatcttatatctctaccattattatgaatgaaatgcaataaatttt 4052978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 39861013 - 39861062
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||| ||||||||||||||| |||||||||||  ||||||| ||||||||    
T  39861013 attcaatcttgtatctctactattattatgaaagaaatgcaataagtttt 39861062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 9609554 - 9609506
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||||||| |||||| || || ||||||| |||||||    
T  9609554 attccatcttgtatctctactattattttgtatgaaatgcaataagttt 9609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 30796850 - 30796802
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||||| |||||||| |||||| ||||| ||||||| |||||||    
T  30796850 attccatcttgcatctctactattattttgaatgaaatgcaataagttt 30796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 5350 - 5426
Alignment:
Q  252 tcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||| || |||  ||| | ||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  5350 tcatgctaatttccatattcatattaaaattccatcttgtatctctactattattatgaatgaaatgcaataagttt 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 27019 - 26941
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    ||||||||| |||||| |||  ||| |||||| |||||||||||||| | |||||||||||| ||||||| ||||||||    
T  27019 gtcatgctagttttcatattcatattagaatttcatcttgtatctctgctattattatgaatgaaatgcaataagtttt 26941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 40187421 - 40187494
Alignment:
Q  255 tgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||| |||||| |||  ||| || |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  40187421 tgctagttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttt 40187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 325
Target Start/End: Complemental strand, 3962460 - 3962301
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||||||||| | ||||||| | | ||||||| | | |||| |||| ||| |||||||||| || | ||| || |||    ||||||||| ||| |    
T  3962460 gcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagttgctcatagctttgctagagtggctttgcgtcatgctagtttcc 3962361  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaag 325  Q
    | |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| ||||    
T  3962360 atattcgtattaggattccatcttgtatctctactattattttgaatgaaatgcaataag 3962301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 4595112 - 4595034
Alignment:
Q  250 tgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||| ||| || |||  ||| || ||| |||||||||||||||| |||||||||||| ||||||| |||||||    
T  4595112 tgtcatgctagtttccatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 4595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 328
Target Start/End: Complemental strand, 25611529 - 25611367
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||||||||| | ||||||| | | ||||||| | | |||| |||| ||| | |||||||| || | ||| || |||    ||||||||| ||| |    
T  25611529 gcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcc 25611430  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    | |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  25611429 atattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 25611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 34899100 - 34899174
Alignment:
Q  224 ctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctcta 298  Q
    |||||||||||| ||| |||||||||||||||| || ||||   ||||| ||  |||||||||||||||||||||    
T  34899100 ctcatagtttagctagcgtagctccatgtcatgttagtttttgtattttcatttgaattccatcttgtatctcta 34899174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 9360800 - 9360877
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||||||||| |||| || |||||||    
T  9360800 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatacaataagttt 9360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 8150907 - 8150859
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  8150907 attccatcttgtatctctactattattatgaatgaaatgtaataagttt 8150859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 5866274 - 5866344
Alignment:
Q  250 tgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||| |||||| || |||  ||| || ||| |||||||||||||||| |||||||||||| |||||||    
T  5866274 tgtcatgttaatttccatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgca 5866344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 6596204 - 6596281
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  6596204 gtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaatgcaataagttt 6596281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 23362347 - 23362416
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| |||||||    
T  23362347 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgca 23362416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 14160551 - 14160599
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||| |||||||||||||| |||||| ||||| ||||||| |||||||    
T  14160551 attccttcttgtatctctactattattttgaatgaaatgcaataagttt 14160599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 22605976 - 22606045
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||||| |||||| |||  ||| || |||||||||||||||||||| |||||||||||| |||||||    
T  22605976 gtcatgctagttttcatattcatattaggattccatcttgtatctctacaattattatgaatgaaatgca 22606045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 23769830 - 23769779
Alignment:
Q  277 agaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||| |||||||    
T  23769830 agaattctatcttgtatctctactattattatgaatgaaatgcaataagttt 23769779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 320
Target Start/End: Original strand, 10213791 - 10213945
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||||||||| | ||||||| | | ||| ||| | | |||| |||| ||| | ||||||||||| | |||||| ||| |  ||||||||| ||| |    
T  10213791 gcttctgatttagtaacctctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagttttgctagggtggcttcgcgtcatgctagtttcc 10213890  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    | |||  ||| |  ||| |||||||||||||||| |||||||||||| |||||||    
T  10213891 atattcatattaagatttcatcttgtatctctactattattatgaatgaaatgca 10213945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 26999321 - 26999276
Alignment:
Q  171 tgatttagtgaactctgatatgaagttcattagaaaacaatccaat 216  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  26999321 tgatttagtgaactctgatttgaagttcattagaagacaagccaat 26999276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 16349580 - 16349529
Alignment:
Q  213 caatgaaattgctcatagtttagatagggtagctccatgtcatgctaatttt 264  Q
    ||||||| ||||||||||||||||||| |||||| ||| |||||||| ||||    
T  16349580 caatgaagttgctcatagtttagatagagtagcttcatatcatgctagtttt 16349529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 26423240 - 26423286
Alignment:
Q  170 ctgatttagtgaactctgatatgaagttcattagaaaacaatccaat 216  Q
    |||||||||||||||||||| ||||||||||||| | |||| |||||    
T  26423240 ctgatttagtgaactctgatgtgaagttcattaggagacaagccaat 26423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 11616689 - 11616766
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||| ||||||||||||||| |||||| ||||| ||||||| |||||||    
T  11616689 gtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaatgcaataagttt 11616766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 45086066 - 45085989
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||| ||||||||| |||||||||||| ||||| | |||||||    
T  45086066 gtcatgctagtttccatattcatattaggattccatcttatatctctactattattatgaatgaaatgaaataagttt 45085989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 32025539 - 32025635
Alignment:
Q  212 ccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattat 308  Q
    |||||||| |||||||||| || | ||| ||  || |||||||||||| ||| || |||| ||| |||||| ||| || ||||||||| ||||||||    
T  32025539 ccaatgaagttgctcatagctttgctagagtgacttcatgtcatgctagtttccatatttatattagaatttcatgttatatctctacaattattat 32025635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 38284367 - 38284423
Alignment:
Q  237 tagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtat 293  Q
    ||||||||||||||||||||||  |||||| ||||||||   ||||| |||||||||    
T  38284367 tagggtagctccatgtcatgctcgttttcatatttttatttaaattcaatcttgtat 38284423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 32282895 - 32282847
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  32282895 attccatcttgtatctctactattattatgaatgaaatgcaataagttt 32282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 26006882 - 26006771
Alignment:
Q  227 atagtttagatagggtagctccatgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagt 326  Q
    ||||||||| || ||||||||||||||||||  ||||    ||||| ||  ||||||||||||| ||||||||  ||||| | ||| ||||||| |||||    
T  26006882 atagtttagctatggtagctccatgtcatgccgatttatgtattttcatttgaattccatcttgcatctctactcttattttaaatgaaatgcattaagt 26006783  T
Q  327 tttcttatgtaa 338  Q
    |||||| |||||    
T  26006782 tttcttttgtaa 26006771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 328
Target Start/End: Original strand, 5839738 - 5839900
Alignment:
Q  166 gcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctaattttc 265  Q
    |||||||||||||| | ||||||| | | ||||||| | | |||| |||| ||| | |||||||| || | ||| || |||    ||||||||| ||| |    
T  5839738 gcttctgatttagtaacctctgatgttaggttcatttggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcc 5839837  T
Q  266 acatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    | |||  ||| |||||| |||||||||||||||| ||||| |||||| ||||||| |||||||    
T  5839838 atattaatattagaatttcatcttgtatctctactattatcatgaatgaaatgcaataagttt 5839900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 36531193 - 36531263
Alignment:
Q  250 tgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    |||||||||||||| || |||  ||| || |||||||||||| ||||||| |||||||||||| |||||||    
T  36531193 tgtcatgctaatttccatattcatattaggattccatcttgtttctctactattattatgaatgaaatgca 36531263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 11503150 - 11503073
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  11503150 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 11503073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 31037762 - 31037689
Alignment:
Q  270 ttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttttcttatgtaaacaaa 343  Q
    |||||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||| ||| ||| ||| ||||||    
T  31037762 ttttattaaaattccatcttgtatctctactattattttgaatgaaatgcagtaactttacttctgtcaacaaa 31037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 32578109 - 32578186
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  32578109 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 32578186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 25663563 - 25663640
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||| | |||||| ||||| ||||||| |||||||    
T  25663563 gtcatgctattttccatattcatattaggattccatcttgtatctctcctattattttgaatgaaatgcaataagttt 25663640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 10631276 - 10631232
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||    
T  10631276 catcatgtgtctctactcttattatgaataaaatgcactaagttt 10631232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 58456 - 58535
Alignment:
Q  249 atgtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||||| ||| || |||  ||| ||  ||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  58456 atgtcatgctagtttccatattcatattagggttccatcttgtatctctactattattatgaatgaaatgcaataagttt 58535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 5364 - 5315
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagtttt 329  Q
    |||||||||||||||||||| ||||| |||||| ||||||| ||||||||    
T  5364 attccatcttgtatctctactattatcatgaatgaaatgcaataagtttt 5315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 6771 - 6848
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  6771 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 6848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 187184 - 187261
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  187184 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 187261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 7608564 - 7608605
Alignment:
Q  279 aattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  7608564 aattccatcttgtatctctactattattatgaatgaaatgca 7608605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 34701356 - 34701311
Alignment:
Q  171 tgatttagtgaactctgatatgaagttcattagaaaacaatccaat 216  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  34701356 tgatttagtgaactctgatttgaagttcattagaagacaaaccaat 34701311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 328
Target Start/End: Original strand, 32957402 - 32957573
Alignment:
Q  157 cgtctactcgcttctgatttagtgaactctgatatgaagttcattagaaaacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatg 256  Q
    |||||| | |||||||||||||| | ||||||| | | ||||||| | | |||| |||| ||| | |||||||| || | ||| || |||    ||||||    
T  32957402 cgtctattagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatg 32957501  T
Q  257 ctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||| ||| || |||  ||| || |||||||||||||||||||| |||||| ||||| ||||||  |||||||    
T  32957502 ctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcgataagttt 32957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 7435697 - 7435628
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||||| ||| || |||  ||| || |||||||||||||||||||| |||||||||||  |||||||    
T  7435697 gtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaacgaaatgca 7435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 34183202 - 34183125
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||| || |||||| |||| |||  | ||| |||||||||||||||| | |||||||||| ||||||| |||||||    
T  34183202 gtcatgttagttttcatatttatattgggatttcatcttgtatctctactactattatgaattaaatgcaataagttt 34183125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 6192630 - 6192678
Alignment:
Q  280 attccatcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||| ||||| ||||| |||||| ||||||| |||||||    
T  6192630 attccatcttgtatttctactattatcatgaatgaaatgcaataagttt 6192678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 12523681 - 12523717
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgca 320  Q
    |||||||||||||||| |||||||||||| |||||||    
T  12523681 catcttgtatctctaccattattatgaatgaaatgca 12523717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 29025284 - 29025240
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    ||||||||||| |||| |||||||||||| ||||||| |||||||    
T  29025284 catcttgtatcactactattattatgaatgaaatgcaataagttt 29025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 31798024 - 31797988
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgca 320  Q
    |||||||||||||| | ||||||||||||||||||||    
T  31798024 catcttgtatctctgctattattatgaataaaatgca 31797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 2280 - 2211
Alignment:
Q  251 gtcatgctaattttcacatttttatcagaattccatcttgtatctctacgattattatgaataaaatgca 320  Q
    ||||||||| ||| || |||  ||| || |||| ||||||||||||||| |||||||||||| |||||||    
T  2280 gtcatgctagtttccatattcatattaggattctatcttgtatctctactattattatgaatgaaatgca 2211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 20721 - 20765
Alignment:
Q  284 catcttgtatctctacgattattatgaataaaatgcactaagttt 328  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||    
T  20721 catcttgtatctctactattattataaatgaaatgcaataagttt 20765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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