View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_2 (Length: 609)
Name: NF16480_low_2
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_2 |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 21 - 599
Target Start/End: Original strand, 19781045 - 19781622
Alignment:
| Q |
21 |
ctgaaccaccagcatagaaacctgactctgttgaatccataacaagcccaaaaatggcacatggaaatgtcacggttcgcattagagttatcccattcga |
120 |
Q |
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| T |
19781045 |
ctgaaccaccagcatagaaacctgactctgttgaatccataacaagcccaaaaatggcacatggaaatgtcacggttcgcattagagttatcccattcga |
19781144 |
T |
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| Q |
121 |
taaactccaaaacttacacgtgctgtccatggaacaagaaacaaatgtacaagtatgaatgccaattccagagttgaaacctgtcactgaatcagaatgc |
220 |
Q |
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| T |
19781145 |
taaactccaaaacttacacgtgcagtccatggaacaagaaacaaatgtacaagtatgaatgcaaattccagagttgaaacatgtcactgaatcagaatga |
19781244 |
T |
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| Q |
221 |
gccttccatttgtgtaagattgggtcactacaagtagaggaatcatcaacaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaa |
320 |
Q |
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| T |
19781245 |
gccttccatttgtgtaagattgggtcactacaagtagaggaatcatcaacaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaa |
19781344 |
T |
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| Q |
321 |
tcgagagatatatcattagcttgataatctacgagaaataaaaaatagacggataatacaaactctcagtataatactaagaagttacaccactttttat |
420 |
Q |
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| T |
19781345 |
tcgagagatatatcattagcttgataatttacgagaaataaaaaatagacggataatacaaactctcagtataatactaagaagttacaccactttttat |
19781444 |
T |
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| Q |
421 |
nnnnnnnnttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctcctactaagaatattaacaattgtcacttaaattttttac |
520 |
Q |
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| T |
19781445 |
-aaaaaaattacttgttttggttgcttaaccaatgccccaggagcactgtttaacattctcctactaagaatattaacaattgttacttaaattttttac |
19781543 |
T |
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| Q |
521 |
ctgaaatcaatagtgacccatcatcactaagatggagactcgaaacaggtttcgagtaaggagtgcatgttttgatgat |
599 |
Q |
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| T |
19781544 |
ctgaaatcaatagtgacccatcatcactaagatggagactcgaaacaggtttcgagtaaggagtgcatgttttgatgat |
19781622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 8435080 - 8435025
Alignment:
| Q |
429 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctccta |
484 |
Q |
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| T |
8435080 |
ttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctccta |
8435025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 458
Target Start/End: Complemental strand, 6830291 - 6830262
Alignment:
| Q |
429 |
ttacttgttttggttgcttaaccaatgcct |
458 |
Q |
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| T |
6830291 |
ttacttgttttggttgcttaaccaatgcct |
6830262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 7609630 - 7609685
Alignment:
| Q |
429 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctcctac |
485 |
Q |
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| T |
7609630 |
ttacttcttttggt-gcttaaccaatgccccgggagcactggttaacattctcctac |
7609685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 457
Target Start/End: Original strand, 18107 - 18135
Alignment:
| Q |
429 |
ttacttgttttggttgcttaaccaatgcc |
457 |
Q |
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| T |
18107 |
ttacttgttttggttgcttaaccaatgcc |
18135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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