View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_23 (Length: 235)
Name: NF16480_low_23
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 41583037 - 41582830
Alignment:
| Q |
13 |
gataattcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
112 |
Q |
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| T |
41583037 |
gataattcttcattctgctgaaagcttgtgtttcgaagtagcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
41582938 |
T |
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| Q |
113 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagc |
212 |
Q |
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| T |
41582937 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagc |
41582838 |
T |
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| Q |
213 |
attattga |
220 |
Q |
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|||||||| |
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| T |
41582837 |
attattga |
41582830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 41589566 - 41589359
Alignment:
| Q |
13 |
gataattcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
112 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589566 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
41589467 |
T |
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| Q |
113 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagc |
212 |
Q |
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| T |
41589466 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaagtacctcatgagaaagagc |
41589367 |
T |
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| Q |
213 |
attattga |
220 |
Q |
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|||||||| |
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| T |
41589366 |
attattga |
41589359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 41570618 - 41570424
Alignment:
| Q |
13 |
gataattcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
112 |
Q |
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|||||||| | |||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||||| ||||||||||||||||| |||||| | |
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| T |
41570618 |
gataattcataattctgctgaaagcttgtgttttgaagtggccctttttttactttagtaccaaggactagtaatttatcaaataattctggtaactcgc |
41570519 |
T |
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| Q |
113 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaa |
207 |
Q |
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| T |
41570518 |
tgttatcatctacatatacttgttctgactcattttgtgacacattgagaaaatgctcttcttcaaagttttctgtcttaatcacctcatgagaa |
41570424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 41556906 - 41556714
Alignment:
| Q |
13 |
gataattcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
112 |
Q |
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|||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| | |
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| T |
41556906 |
gataattcttcattctgctggaagcttgtgttttgatgcggcccttttgtgactttagtaccaaga---agtaatttatcaaataattctgataactcgc |
41556810 |
T |
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| Q |
113 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagc |
212 |
Q |
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|| ||||| |||| | || |||||| ||||||||| ||||||||||||||||||||||| ||||||| || | | |||||||||||||| |
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| T |
41556809 |
tgttatcatctactttcacttgttc------------tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagc |
41556722 |
T |
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