View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_25 (Length: 227)
Name: NF16480_low_25
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 40928049 - 40928268
Alignment:
| Q |
7 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgtttggatgctaatatataaatgattatggttttgattttccctttttagatataa |
106 |
Q |
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| T |
40928049 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgttttgatgctaatatataaatgcttatggttttgattttccccttttagatataa |
40928148 |
T |
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| Q |
107 |
ttaacaaagagatttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagctgatactgatgtgt |
206 |
Q |
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| T |
40928149 |
ttaacaaagagatttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagttgatactgatgtgt |
40928248 |
T |
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| Q |
207 |
gtattgctcaagtggatgct |
226 |
Q |
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|||||||||||||||||||| |
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| T |
40928249 |
gtattgctcaagtggatgct |
40928268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 40928770 - 40928827
Alignment:
| Q |
7 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgtttggatgctaat |
64 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
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| T |
40928770 |
ggataaacatgataaatgcttgtcaataaatatggtttggctctgttttgatgctaat |
40928827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 48505716 - 48505497
Alignment:
| Q |
7 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgtttggatgctaatatataaatgattatggttttgattttccctttttagatataa |
106 |
Q |
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| T |
48505716 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgttttgatgctaatatataaatgcttatggttttgattttccccttttagatataa |
48505617 |
T |
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| Q |
107 |
ttaacaaagagatttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagctgatactgatgtgt |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48505616 |
ttaacaaagagatttgtattttccccttttttaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcataggtgatactgatgtgt |
48505517 |
T |
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| Q |
207 |
gtattgctcaagtggatgct |
226 |
Q |
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|||||||| ||||||||||| |
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| T |
48505516 |
gtattgcttaagtggatgct |
48505497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 48504995 - 48504938
Alignment:
| Q |
7 |
ggataaacatgataaatgcttatgtataaatatagtttggctctgtttggatgctaat |
64 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
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| T |
48504995 |
ggataaacatgataaatgcttgtcaataaatatggtttggctctgttttgatgctaat |
48504938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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