View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_3 (Length: 602)
Name: NF16480_low_3
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 138 - 363
Target Start/End: Complemental strand, 292696 - 292466
Alignment:
| Q |
138 |
tacattattcagagactaagagattattgggatatatttagatatctataattggctgttctccaaagtcaatgagtaaatgatgactgatgctcttcaa |
237 |
Q |
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| T |
292696 |
tacattattcagagactaagagattattgggatatatttagatatctataattggctgttctccaaagtcaatgagtaaatgatgacggattctcttcaa |
292597 |
T |
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| Q |
238 |
atttctcaaactgcaacagagttttctaatgaagttcaacaaaacatcctttatttatttatactaaacatccttc-----attttagttttaagacttc |
332 |
Q |
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| T |
292596 |
atttgtcaaactgcaacagaattttctaatgaagttcaacaaaacatcctttatttatttatactaaacatccttcatttcattttagtgttaagacttc |
292497 |
T |
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| Q |
333 |
acctgacatattatgttttcttgatactctc |
363 |
Q |
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| T |
292496 |
acctgacatattatgttttcttgatactctc |
292466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 394 - 576
Target Start/End: Complemental strand, 292443 - 292261
Alignment:
| Q |
394 |
caatttttaactcactttaaccacttgtatgcctcatttcgcctgttctggctttaaaaccactgtctgagagtatgctcatttctaaattttaattcga |
493 |
Q |
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| T |
292443 |
caatttttaactcactttaaccacttgtatgcctcatttcgcctgttctggctttaaaaccactgtctcagagtatgctcatttctaaattttaattcga |
292344 |
T |
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| Q |
494 |
ctagaagcaaaaatattacacccagttaaatatgaaagttgcttctagaacaaaaacattctaacatatatcacttcaccatt |
576 |
Q |
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| T |
292343 |
ctagaagcaaaaatattacacccagttaaatatgtaagttgcttctagaacaaaaacattctaacatatatcacttcaccatt |
292261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 292846 - 292724
Alignment:
| Q |
19 |
caatatcctacttacattgcccaacctgctcctctgccttgtccaagggaaggagcttattggccttctcaccaacatcattttgtatttaacaactagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
292846 |
caatatcctacttacattgcccaacctgctcctctgccttgtccaagggaaggagcttattggccttctcaccaacatcattttgtatttaacaactagc |
292747 |
T |
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| Q |
119 |
agtacaaatttttctaacctaca |
141 |
Q |
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| T |
292746 |
agtacaaatttttctaacctaca |
292724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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