View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_6 (Length: 516)
Name: NF16480_low_6
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 49739622 - 49740110
Alignment:
| Q |
19 |
cttgcattgcaaactaacctgaccatctttaaactataagataaagcagaagaatatatattacagaacaagatgctcattaccaaagctagccatttat |
118 |
Q |
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| T |
49739622 |
cttgcattgcaagctaacctgaccatctttaaactataagataaagcagaagaatatatattacagaacaagatgctcattaccaaagctagccatttat |
49739721 |
T |
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| Q |
119 |
gatttatatatggtttaaacattaaatgcaccttggaacaacatgagctctttgaataagggnnnnnnntgtatatggaaagtatcacacaccatccact |
218 |
Q |
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| T |
49739722 |
gatttatatatggtttaaacattaaatgcaccttggaacaacatgtgctctttgaataagggaaaaaaatgtatatggaaagtatcacacaccatccact |
49739821 |
T |
|
| Q |
219 |
aattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatggttctagact |
318 |
Q |
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| T |
49739822 |
aattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatggttctagact |
49739921 |
T |
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| Q |
319 |
atctgagaagnnnnnnnncccctgttatttgtcactttaatagtgtacggtacagttcctttgatatcacatgaagtaaattaagaaattgctttaaaat |
418 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49739922 |
atctgagaagttttttttcccctgttatttgtcactttaatagtgtacggtacagttcctttgatatcacatgaagtaaattaagaaattgctttaaaat |
49740021 |
T |
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| Q |
419 |
ttatattttcaattccatttttagctcttcaagcataactctttaatcaatccattgcttacataaatatgaacctttccaagaataat |
507 |
Q |
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| T |
49740022 |
ttatattttcaattccatttttagctcttcaagcataactctttaatcaatccattgcttacataaatatgaacctttccaagcataat |
49740110 |
T |
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