View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16480_low_9 (Length: 439)
Name: NF16480_low_9
Description: NF16480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16480_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 53042580 - 53042991
Alignment:
| Q |
15 |
aattttcccatttactcaatggtgatcataactataaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggac |
114 |
Q |
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| T |
53042580 |
aattttcccatttactcaatggtgatcataactataaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggac |
53042679 |
T |
|
| Q |
115 |
gtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctgg |
214 |
Q |
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| T |
53042680 |
gtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctgg |
53042779 |
T |
|
| Q |
215 |
ttttaagcatgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccc |
314 |
Q |
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| T |
53042780 |
ttttaagcatgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccc |
53042879 |
T |
|
| Q |
315 |
tgttattgattcattaaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatatt |
414 |
Q |
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| T |
53042880 |
tgttattgattcattgaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatatt |
53042979 |
T |
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| Q |
415 |
ggttataggttc |
426 |
Q |
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| T |
53042980 |
ggttataggttc |
53042991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 301
Target Start/End: Complemental strand, 15965275 - 15965023
Alignment:
| Q |
49 |
taaaataggatgaagctggtgccgcagccatcaaaacagttgagttggatgcagttctaggaggacgtgctgttcagtatcgtgaagtacagggtcatga |
148 |
Q |
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| T |
15965275 |
taaaacaggatgaagctggtgctgcagccatcaagacagttgagctggatgcagctctcggaggacgtgctgttcagtatcgggaagtacagggccatga |
15965176 |
T |
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| Q |
149 |
aactcagaagttcctgtcatatttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaagcatgttgaagctgaagaacataagaca |
248 |
Q |
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|||| | |||||||| || ||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||| |||| || |||||| |||| |||||| |
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| T |
15965175 |
aactgaaaagttcctttcttatttcaaaccttgtattatacctcaagaaggtggagttgcttctggttttaaacatgccgaggctgaaaaacacaagaca |
15965076 |
T |
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| Q |
249 |
cggttgtttgtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagttt |
301 |
Q |
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| T |
15965075 |
cggttgtttgtatgcagagggaaacatgttgtacatgtcaaagaggcaagttt |
15965023 |
T |
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