View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16481_high_1 (Length: 981)

Name: NF16481_high_1
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16481_high_1
NF16481_high_1
[»] chr1 (5 HSPs)
chr1 (24-300)||(42168851-42169128)
chr1 (508-800)||(42169271-42169572)
chr1 (798-974)||(42169655-42169831)
chr1 (393-435)||(42169174-42169216)
chr1 (449-490)||(42169212-42169253)
[»] chr7 (3 HSPs)
chr7 (508-611)||(21686047-21686150)
chr7 (635-684)||(7725551-7725600)
chr7 (851-880)||(5620261-5620290)
[»] scaffold0002 (2 HSPs)
scaffold0002 (564-670)||(333841-333947)
scaffold0002 (102-187)||(333532-333617)
[»] chr4 (1 HSPs)
chr4 (826-880)||(17823012-17823068)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 24 - 300
Target Start/End: Original strand, 42168851 - 42169128
Alignment:
Q  24 atcatcgtttgtttctttgtgt-gttgttgcttcattacactgttgtttcttgctcagtgttcttttcttgttcacacaatgacagacactacagatgat 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42168851 atcatcgtttgtttctttgtgttgttgttgcttcattacactgttgtttcttgctcagtgttcttttcttgttcacacaatgacagacactacagatgat 42168950  T
Q  123 attgctgaagaaatctcgttccagagctttgatgatgattgtaggttgcttggtaatcttctcaacgacattcttcatcgtgaagttggtaccacctttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42168951 attgctgaagaaatctcgttccagagctttgatgatgattgtaggttgcttggtaatcttctcaacgacattcttcatcgtgaagttggtaccacctttg 42169050  T
Q  223 ttgacaaactcgaaagaattcgtgtccttgctcaggtaactaaaaattcaaacttttctctttctcttcataccccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169051 ttgacaaactcgaaagaattcgtgtccttgctcaggtaactaaaaattcaaacttttctctttctcttcataccccac 42169128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 508 - 800
Target Start/End: Original strand, 42169271 - 42169572
Alignment:
Q  508 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42169271 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaaga 42169370  T
Q  608 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaat-aataatccatggctacac------- 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  42169371 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaataaataatccatggctacactaactct 42169470  T
Q  700 -attatttgttggtaattaatactactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 798  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169471 gattatttgttggtaattaatattactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 42169570  T
Q  799 ga 800  Q
    ||    
T  42169571 ga 42169572  T

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Target: chr1; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 798 - 974
Target Start/End: Original strand, 42169655 - 42169831
Alignment:
Q  798 agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 897  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169655 agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 42169754  T
Q  898 ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 974  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169755 ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 42169831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 42169174 - 42169216
Alignment:
Q  393 ttttcccccttgctgaatgtgaaaatctatgaagcactgacac 435  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  42169174 ttttcccccttgcttaatgtgaaaatctatgaagcactgacac 42169216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 42169212 - 42169253
Alignment:
Q  449 gacacgcctttgataagtgagtgctagtgaatgatgtttcta 490  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42169212 gacacgcctttcataagtgagtaatagtgaatgatgtttcta 42169253  T

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Target: chr7 (Bit Score: 88; Significance: 9e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 508 - 611
Target Start/End: Complemental strand, 21686150 - 21686047
Alignment:
Q  508 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 607  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21686150 ggcagagtggatgtaatatgaggcaagcaggtatagtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaaga 21686051  T
Q  608 agct 611  Q
    ||||    
T  21686050 agct 21686047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 7725600 - 7725551
Alignment:
Q  635 ccattatcttactatgatgggtatagctgaaactcaccataggtaataat 684  Q
    ||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  7725600 ccattatcttactgtgactgatatagctgaaactcaccataggtaataat 7725551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 880
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
Q  851 taattaagttgtttatccaaacagggccta 880  Q
    ||||||||||||||||||||||||||||||    
T  5620261 taattaagttgtttatccaaacagggccta 5620290  T

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Target: scaffold0002 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 564 - 670
Target Start/End: Original strand, 333841 - 333947
Alignment:
Q  564 gagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctg 663  Q
    ||||||||||| ||||||||||| || ||||||   ||||||||||||   || ||||||||||| ||||| || ||||||||||||||| | |||||||    
T  333841 gagaagcagttggcttcagagttatccaagatgaacttagaagaagctcaaacacttgctcgtgcattcagtcactatcttactatgatgagcatagctg 333940  T
Q  664 aaactca 670  Q
    |||||||    
T  333941 aaactca 333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 333532 - 333617
Alignment:
Q  102 atgacagacactacagatgatattgctgaagaaatctcgttccagagctttgatgatgattgtaggttgcttggtaatcttctcaa 187  Q
    ||||| |||||||| ||||| ||||| || ||||| || |||||  |||| || ||||| |||| ||||||||| |||||||||||    
T  333532 atgacggacactactgatgacattgccgaggaaatgtccttccaaggcttcgacgatgactgtaagttgcttggaaatcttctcaa 333617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 826 - 880
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
Q  826 atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 880  Q
    |||||||| ||||||||||||||  || ||||||| |||||||||||||| ||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

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