View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_high_12 (Length: 357)
Name: NF16481_high_12
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 14330962 - 14331295
Alignment:
| Q |
22 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctagtccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14330962 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctgttccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
14331061 |
T |
|
| Q |
122 |
acagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggct |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14331062 |
acaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggct |
14331161 |
T |
|
| Q |
222 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14331162 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatt |
14331261 |
T |
|
| Q |
322 |
tatgttgaactttgttgtgttctgtgctgctcct |
355 |
Q |
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||||||||||||||||||||| |||| ||||||| |
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| T |
14331262 |
tatgttgaactttgttgtgttttgtgttgctcct |
14331295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 21724434 - 21724767
Alignment:
| Q |
22 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctagtccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
121 |
Q |
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| T |
21724434 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctgttccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
21724533 |
T |
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| Q |
122 |
acagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggct |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21724534 |
acaggtactcattatgtggtttgcgtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggct |
21724633 |
T |
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| Q |
222 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21724634 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatt |
21724733 |
T |
|
| Q |
322 |
tatgttgaactttgttgtgttctgtgctgctcct |
355 |
Q |
| |
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||||||||||||||||||||| |||| ||||||| |
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| T |
21724734 |
tatgttgaactttgttgtgttttgtgttgctcct |
21724767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 21804170 - 21804488
Alignment:
| Q |
22 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctagtccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21804170 |
ctggattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctgttccaattgggtgtatgttgtggtttgtgttttattggcctgttcca |
21804269 |
T |
|
| Q |
122 |
acagttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggct |
221 |
Q |
| |
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|||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21804270 |
acaggtactcattatgtg---------------gtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggct |
21804354 |
T |
|
| Q |
222 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtt |
321 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21804355 |
agatttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatt |
21804454 |
T |
|
| Q |
322 |
tatgttgaactttgttgtgttctgtgctgctcct |
355 |
Q |
| |
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||||||||||||||||||||| |||| ||||||| |
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| T |
21804455 |
tatgttgaactttgttgtgttttgtgttgctcct |
21804488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 25 - 353
Target Start/End: Original strand, 9987580 - 9987893
Alignment:
| Q |
25 |
gattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctagtccaattgggtgtatgttgtggtttgtgttttattggcctgttccaaca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9987580 |
gattcatgtttgatgttgaaatatattgtgggttttgtgcgtttttgctgttccaattgggtgtatgttgtggtttctgttttattggcctgttccaaca |
9987679 |
T |
|
| Q |
125 |
gttactcattatgtggtttgcgtttttgtggtttgcatttttgctgttcttgagttgctgtttatcaggactatatatcttattaggatctttggctaga |
224 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
9987680 |
gttactaattatgtg---------------gtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattgggatctttggctaga |
9987764 |
T |
|
| Q |
225 |
tttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttat |
324 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9987765 |
tttacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttat |
9987864 |
T |
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| Q |
325 |
gttgaactttgttgtgttctgtgctgctc |
353 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
9987865 |
gttgaactttgttgtgttttgtgctgctc |
9987893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 6061798 - 6061728
Alignment:
| Q |
227 |
tacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaaca |
297 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
6061798 |
tacacccttatttattcaaaacctgagtactacaatgctaatttcttgaatggtgttgagatcttttaaca |
6061728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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