View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16481_high_14 (Length: 324)
Name: NF16481_high_14
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_high_14 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0094 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 9988171 - 9987859
Alignment:
| Q |
12 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9988171 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaatcttttggaggatgatgggtgaggttcttgtt |
9988072 |
T |
|
| Q |
112 |
caagataataagccacacatgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaaaa |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
9988071 |
caagataataagccacacgtgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccagtaactaaaaaagaaagtaaaa |
9987972 |
T |
|
| Q |
212 |
caagaaacattaacaaataaacattcttaaaggtcttttaactctataatagaccaaatgtttgaaatcatcacacatgagcagcacaaaacacaacaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9987971 |
taagaaacattaacaaataaacattcttaaaggtattttaactctaaaatagaccaaatatttgaaatcatcacacatgagcagcacaaaacacaacaaa |
9987872 |
T |
|
| Q |
312 |
gttcaacataaac |
324 |
Q |
| |
|
||||||||||||| |
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|
| T |
9987871 |
gttcaacataaac |
9987859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 17216770 - 17217084
Alignment:
| Q |
12 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttca---------agcttttggaggatgatgggtgag |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17216770 |
aattctcagataaagaaaccaattgaagataacggaatatggaacatactttggaaaaggtggttcagttggttcaagcttttggaggatgatgggtgag |
17216869 |
T |
|
| Q |
103 |
gttcttgttcaagataataagccacacatgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaag |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
17216870 |
gttcttgttcaagataataagccacgagtgactcgttgaagcaacaattctttcctataatttaatt-aatgtcatgagtagaaccagtaactaaaaaag |
17216968 |
T |
|
| Q |
203 |
aaagtaaaacaagaaacattaacaaataaacattcttaaaggtcttttaactctataatagaccaaatgtttgaa----atcatcacacatgagcagcac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
17216969 |
aaagtaaaacaagaaacattaacaaataaatattctaaaaggtcttttaactctaaaatagaccaaatgtttgaagaccatcatcacacaggagcatcac |
17217068 |
T |
|
| Q |
299 |
aaaacacaacaaagtt |
314 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
17217069 |
aaaacacaacaaagtt |
17217084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 21804764 - 21804453
Alignment:
| Q |
12 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21804764 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttgtt |
21804665 |
T |
|
| Q |
112 |
caagataataagccacacatgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaaaa |
211 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21804664 |
caagataataagtcacacgtgactcgttgaagcaacaattcattcctgcaatttaatttaatgtcatgagtagaaccagtaactaaaaaagaaagtaaaa |
21804565 |
T |
|
| Q |
212 |
caagaaacattaacaaataaacattcttaaaggtcttttaactctataatagaccaaatgtttgaaatcatcacacatgagcagcacaaaacacaacaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
21804564 |
caagaaacattaacaaataaacattcttaaatgtcttttaactctaaaatagaccaaatgtttaaaatcatcacacaggagcaacacaaaacacaacaaa |
21804465 |
T |
|
| Q |
312 |
gttcaacataaa |
323 |
Q |
| |
|
|||||||||||| |
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|
| T |
21804464 |
gttcaacataaa |
21804453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 21725036 - 21724732
Alignment:
| Q |
12 |
aattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21725036 |
aattctcacataaagaaaccaattgaagataa-------tggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttgtt |
21724944 |
T |
|
| Q |
112 |
caagataataagccacacatgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaaaa |
211 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21724943 |
caagataataagtcacacgtgactcgttgaagcaacaattcattcctgcaatttaatttaatgtcatgagtagaaccagtaactaaaaaagaaagtaaaa |
21724844 |
T |
|
| Q |
212 |
caagaaacattaacaaataaacattcttaaaggtcttttaactctataatagaccaaatgtttgaaatcatcacacatgagcagcacaaaacacaacaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
21724843 |
caagaaacattaacaaataaacattcttaaatgtcttttaactctaaaatagaccaaatgtttaaaatcatcacacaggagcaacacaaaacacaacaaa |
21724744 |
T |
|
| Q |
312 |
gttcaacataaa |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21724743 |
gttcaacataaa |
21724732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 48632017 - 48632225
Alignment:
| Q |
10 |
aaaattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttcttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48632017 |
aaaattctcacataaagaaaccaattaaagatgacagaatatggaacatactctggaaaaggtggttcaagtttttggaggatgatgggtgaggttcttg |
48632116 |
T |
|
| Q |
110 |
ttcaagataataagccacacatgactcgttgaagcaacaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaa |
209 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| ||||||||||| || |
|
|
| T |
48632117 |
ttcaagataataagccacgcgtgactcgttgaagcaacaattctttcctgtaatttaatttaatgtcatgagaagaagcagtaacaaaaaaagaaagcaa |
48632216 |
T |
|
| Q |
210 |
aacaagaaa |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
48632217 |
aacaagaaa |
48632225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 146 - 323
Target Start/End: Complemental strand, 14331437 - 14331260
Alignment:
| Q |
146 |
acaattctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaaaacaagaaacattaacaaataaacattcttaaaggt |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14331437 |
acaattatttcctgcaatttaatttaatgtcatgagtagaaccagtaactaaaaaagaaagtaaaacaagaaacattaacaaataaacattcttaaatgt |
14331338 |
T |
|
| Q |
246 |
cttttaactctataatagaccaaatgtttgaaatcatcacacatgagcagcacaaaacacaacaaagttcaacataaa |
323 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
14331337 |
cttttaactctaaaatagaccaaatgtttgaaatcatcacacaggagcaacacaaaacacaacaaagttcaacataaa |
14331260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 314
Target Start/End: Complemental strand, 8383 - 8215
Alignment:
| Q |
150 |
ttctttcctgcaatttaatttaatgtcatgagtagaaccaataactaaaaaagaaagtaaaacaagaaacattaacaaataaacattcttaaaggtcttt |
249 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8383 |
ttcttttctgtaatttactttaatgtcatgagtagaaccagtaactaaaaaagaaagtaaaacaagaaatattaacaaataaacattctaaaaggtcttt |
8284 |
T |
|
| Q |
250 |
taactctataatagaccaaatgtttgaa----atcatcacacatgagcagcacaaaacacaacaaagtt |
314 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
8283 |
taactctaaaattgaccaaatgtttgaagaacatcatcacacaggagcagcacaaaacataacaaagtt |
8215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 8477 - 8379
Alignment:
| Q |
10 |
aaaattctcacataaagaaaccaattgaagataacggaatatggaacatactctggaaaaggtggttcaagcttttggaggatgatgggtgaggttctt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8477 |
aaaattctcacataaagaaaccaattgaagataacaaaatatggaacatattctggaaaaggtggttcaagcttgtggaggatgatgggtgaggttctt |
8379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 33584669 - 33584568
Alignment:
| Q |
218 |
acattaacaaataaacattcttaaaggtcttttaactctataatagaccaaatgtttgaa-----atcatcacacatgagcagcacaaaacacaacaaag |
312 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
33584669 |
acattaacaactaaacattctaaaaggtcttttaactctaaaatagaccaaatgttaaaaagatcatcatcacacatgaacaacacaaaacacaacaaag |
33584570 |
T |
|
| Q |
313 |
tt |
314 |
Q |
| |
|
|| |
|
|
| T |
33584569 |
tt |
33584568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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