View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16481_high_23 (Length: 206)

Name: NF16481_high_23
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16481_high_23
NF16481_high_23
[»] chr7 (1 HSPs)
chr7 (63-188)||(47817421-47817546)
[»] chr8 (6 HSPs)
chr8 (63-114)||(9370101-9370152)
chr8 (69-100)||(9404156-9404187)
chr8 (69-100)||(9406317-9406348)
chr8 (70-100)||(9369094-9369124)
chr8 (136-178)||(9370037-9370079)
chr8 (68-100)||(9406857-9406889)
[»] chr4 (8 HSPs)
chr4 (63-114)||(23669245-23669296)
chr4 (136-188)||(23669172-23669224)
chr4 (13-58)||(9641418-9641462)
chr4 (71-114)||(33018663-33018706)
chr4 (71-100)||(23668227-23668256)
chr4 (74-103)||(50123934-50123963)
chr4 (71-107)||(11883022-11883058)
chr4 (68-100)||(42859747-42859779)
[»] chr6 (1 HSPs)
chr6 (71-114)||(6535300-6535343)
[»] chr3 (3 HSPs)
chr3 (71-114)||(12008931-12008974)
chr3 (68-100)||(10670866-10670898)
chr3 (67-99)||(52743676-52743708)
[»] chr1 (2 HSPs)
chr1 (69-100)||(28700030-28700061)
chr1 (68-100)||(6815261-6815293)
[»] chr2 (1 HSPs)
chr2 (68-100)||(11873281-11873313)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 47817421 - 47817546
Alignment:
Q  63 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctctcnnnnnnnnnnnnnnnnggaacaaaataaccttttggaattgctagat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||| |||||||||||||| ||| ||||||||    
T  47817421 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctcttttttttttttttttttggagcaaaataaccttttagaactgctagat 47817520  T
Q  163 tgatcaagctcactagatcatactat 188  Q
    |||||||||||| |||||||||||||    
T  47817521 tgatcaagctcattagatcatactat 47817546  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 9370152 - 9370101
Alignment:
Q  63 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370152 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctct 9370101  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 100
Target Start/End: Original strand, 9404156 - 9404187
Alignment:
Q  69 tctagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||||||||||||||||    
T  9404156 tctagggtgggagaccttaataggtctcctac 9404187  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 100
Target Start/End: Original strand, 9406317 - 9406348
Alignment:
Q  69 tctagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||||||||||||||||    
T  9406317 tctagggtgggagaccttaataggtctcctac 9406348  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 9369094 - 9369124
Alignment:
Q  70 ctagggtgggagaccttaataggtctcctac 100  Q
    |||||||||||||||||||||||||||||||    
T  9369094 ctagggtgggagaccttaataggtctcctac 9369124  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 9370079 - 9370037
Alignment:
Q  136 caaaataaccttttggaattgctagattgatcaagctcactag 178  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||    
T  9370079 caaaataaccttttagaactgctagattgatcaaactcactag 9370037  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 9406889 - 9406857
Alignment:
Q  68 gtctagggtgggagaccttaataggtctcctac 100  Q
    |||||| ||||||||||||||||||||||||||    
T  9406889 gtctagtgtgggagaccttaataggtctcctac 9406857  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 23669296 - 23669245
Alignment:
Q  63 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23669296 gcggtgtctagggtgggagaccttaataggtctcctacggtgcataacctct 23669245  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 23669224 - 23669172
Alignment:
Q  136 caaaataaccttttggaattgctagattgatcaagctcactagatcatactat 188  Q
    |||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  23669224 caaaataaccttctagaactgctagattgatcaagctcactagattatactat 23669172  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 9641418 - 9641462
Alignment:
Q  13 aatatattgaaaagaagattgttacaagaagagaaaggggttaagc 58  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||    
T  9641418 aatatattgaaaa-aagattgttaaaagaagagaaaggggttaagc 9641462  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 33018706 - 33018663
Alignment:
Q  71 tagggtgggagaccttaataggtctcctacggtgcataacctct 114  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||    
T  33018706 tagggtgggagacctttataggtctcctaccgtgcatgacctct 33018663  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 23668227 - 23668256
Alignment:
Q  71 tagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||||||||||||||    
T  23668227 tagggtgggagaccttaataggtctcctac 23668256  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 50123934 - 50123963
Alignment:
Q  74 ggtgggagaccttaataggtctcctacggt 103  Q
    ||||||||||||||||||||||||||||||    
T  50123934 ggtgggagaccttaataggtctcctacggt 50123963  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 11883058 - 11883022
Alignment:
Q  71 tagggtgggagaccttaataggtctcctacggtgcat 107  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  11883058 tagggtgggagacctttataggtctcctaccgtgcat 11883022  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 42859747 - 42859779
Alignment:
Q  68 gtctagggtgggagaccttaataggtctcctac 100  Q
    |||||| ||||||||||||||||||||||||||    
T  42859747 gtctagtgtgggagaccttaataggtctcctac 42859779  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 6535343 - 6535300
Alignment:
Q  71 tagggtgggagaccttaataggtctcctacggtgcataacctct 114  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||    
T  6535343 tagggtgggagacctttataggtctcctaccgtgcatgacctct 6535300  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 12008931 - 12008974
Alignment:
Q  71 tagggtgggagaccttaataggtctcctacggtgcataacctct 114  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||    
T  12008931 tagggtgggagacctttataggtctcctaccgtgcatgacctct 12008974  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 10670898 - 10670866
Alignment:
Q  68 gtctagggtgggagaccttaataggtctcctac 100  Q
    |||||| ||||||||||||||||||||||||||    
T  10670898 gtctagtgtgggagaccttaataggtctcctac 10670866  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 52743676 - 52743708
Alignment:
Q  67 tgtctagggtgggagaccttaataggtctccta 99  Q
    ||||||||||| |||||||||||||||||||||    
T  52743676 tgtctagggtgagagaccttaataggtctccta 52743708  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 100
Target Start/End: Complemental strand, 28700061 - 28700030
Alignment:
Q  69 tctagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||||||||||||||||    
T  28700061 tctagggtgggagaccttaataggtctcctac 28700030  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 6815261 - 6815293
Alignment:
Q  68 gtctagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||| |||||||||||||    
T  6815261 gtctagggtgggagaccttgataggtctcctac 6815293  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 11873281 - 11873313
Alignment:
Q  68 gtctagggtgggagaccttaataggtctcctac 100  Q
    ||||||||||||||||||| |||||||||||||    
T  11873281 gtctagggtgggagaccttgataggtctcctac 11873313  T

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