View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16481_high_5 (Length: 441)

Name: NF16481_high_5
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16481_high_5
NF16481_high_5
[»] chr1 (6 HSPs)
chr1 (202-415)||(16324156-16324368)
chr1 (49-202)||(16324391-16324544)
chr1 (296-326)||(1602811-1602841)
chr1 (292-326)||(39216097-39216131)
chr1 (291-325)||(42761448-42761482)
chr1 (19-52)||(16324567-16324600)
[»] chr8 (4 HSPs)
chr8 (235-291)||(6189672-6189732)
chr8 (296-326)||(11295658-11295688)
chr8 (292-326)||(24287779-24287813)
chr8 (292-326)||(40640272-40640306)
[»] chr5 (6 HSPs)
chr5 (238-294)||(2673888-2673948)
chr5 (235-294)||(19216324-19216387)
chr5 (236-294)||(36409677-36409739)
chr5 (293-326)||(42364333-42364366)
chr5 (235-291)||(20503271-20503327)
chr5 (235-287)||(27895943-27895998)
[»] chr7 (2 HSPs)
chr7 (296-326)||(2943328-2943358)
chr7 (296-326)||(18654244-18654274)
[»] chr4 (3 HSPs)
chr4 (235-294)||(9992640-9992703)
chr4 (260-294)||(38949749-38949783)
chr4 (236-294)||(2401079-2401141)
[»] chr2 (2 HSPs)
chr2 (260-294)||(14796917-14796951)
chr2 (296-332)||(26229434-26229470)
[»] chr3 (2 HSPs)
chr3 (290-326)||(10872782-10872818)
chr3 (235-294)||(36571414-36571476)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 202 - 415
Target Start/End: Complemental strand, 16324368 - 16324156
Alignment:
Q  202 atcattattataagcaaaaattcacannnnnnngttcattgaataaatgatgtatgtgataatatagactagatacatcatttattgaataaagttttgc 301  Q
    |||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  16324368 atcattgttataagcaaaaattcacatttttt-gttcattgaataaatgatgtatgtgataatatagactaaatacatcatgtattgaataaagttttgc 16324270  T
Q  302 ttataatagtgaccggaaggtgtatcattactgcagcaaagtcagatccgtcaatcatcatatcatgtgttttccaattgtttgttattgattcaagtta 401  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16324269 gtataatagtgaccggaaggtgtatcattactgcagcaaagtcagatccgtcaatcatcatatcatgtgttttccaattgtttgttattgattcaagtta 16324170  T
Q  402 ggtacattgtgtga 415  Q
    ||||||||||||||    
T  16324169 ggtacattgtgtga 16324156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 16324544 - 16324391
Alignment:
Q  49 tcatggaaatagattccatcctggtggtaattgtgtgacgctgttacttatcttgattgtctgatctaaatcaatgatgagatcgtttaatattgaattg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16324544 tcatggaaatagattccatcctggtggtaattgtgtgacgctgttacttatcttgattgtctgatctaaatcaatgatgagatcgtttaatattgaattg 16324445  T
Q  149 ttgatgtgtaatttaaatcgtttccgatcttgaataaatgactaagattgacta 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16324444 ttgatgtgtaatttaaatcgtgtccgatcttgaataaatgactaagattgacta 16324391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 1602841 - 1602811
Alignment:
Q  296 ttttgcttataatagtgaccggaaggtgtat 326  Q
    |||||||||||||||||||||||||||||||    
T  1602841 ttttgcttataatagtgaccggaaggtgtat 1602811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 39216131 - 39216097
Alignment:
Q  292 aaagttttgcttataatagtgaccggaaggtgtat 326  Q
    ||||||||||||||||||||||||||| |||||||    
T  39216131 aaagttttgcttataatagtgaccggagggtgtat 39216097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 42761482 - 42761448
Alignment:
Q  291 taaagttttgcttataatagtgaccggaaggtgta 325  Q
    ||||||||||||||||||| |||||||||||||||    
T  42761482 taaagttttgcttataataatgaccggaaggtgta 42761448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 16324600 - 16324567
Alignment:
Q  19 tctatatatttttgaaactttataattcagtcat 52  Q
    ||||||| ||||||||||||||||||||||||||    
T  16324600 tctatatttttttgaaactttataattcagtcat 16324567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 6189672 - 6189732
Alignment:
Q  235 gttcattgaataaatgatgtatgtg----ataatatagactagatacatcatttattgaat 291  Q
    |||||| ||||||||||||||| ||    ||||||||||||| ||||||||||||||||||    
T  6189672 gttcatcgaataaatgatgtatttggtcaataatatagactaaatacatcatttattgaat 6189732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 11295688 - 11295658
Alignment:
Q  296 ttttgcttataatagtgaccggaaggtgtat 326  Q
    |||||||||||||||||||||||||||||||    
T  11295688 ttttgcttataatagtgaccggaaggtgtat 11295658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 24287813 - 24287779
Alignment:
Q  292 aaagttttgcttataatagtgaccggaaggtgtat 326  Q
    ||||||||||||||||||||||||||| |||||||    
T  24287813 aaagttttgcttataatagtgaccggagggtgtat 24287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 40640306 - 40640272
Alignment:
Q  292 aaagttttgcttataatagtgaccggaaggtgtat 326  Q
    ||||||||||||||||||||||||||| |||||||    
T  40640306 aaagttttgcttataatagtgaccggagggtgtat 40640272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 2673888 - 2673948
Alignment:
Q  238 cattgaataaatgatgtatgtg----ataatatagactagatacatcatttattgaataaa 294  Q
    |||| |||||||||||||||||    ||||||||||||| || ||||||||||||||||||    
T  2673888 cattcaataaatgatgtatgtggtctataatatagactacatgcatcatttattgaataaa 2673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 19216324 - 19216387
Alignment:
Q  235 gttcattgaataaatgatgtatgtg----ataatatagactagatacatcatttattgaataaa 294  Q
    ||||||| ||||||||||| |||||    ||||||||||||| || ||||||||||||||||||    
T  19216324 gttcattcaataaatgatgcatgtggtccataatatagactacatgcatcatttattgaataaa 19216387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 36409739 - 36409677
Alignment:
Q  236 ttcattgaataaatgatgtatgtgata----atatagactagatacatcatttattgaataaa 294  Q
    |||||||||||||||||||||||||||    |||||||| | ||| |||||||||| ||||||    
T  36409739 ttcattgaataaatgatgtatgtgatatatgatatagaccacatatatcatttattcaataaa 36409677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 42364333 - 42364366
Alignment:
Q  293 aagttttgcttataatagtgaccggaaggtgtat 326  Q
    ||||||||||||||||||||||||||||| ||||    
T  42364333 aagttttgcttataatagtgaccggaaggagtat 42364366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 20503271 - 20503327
Alignment:
Q  235 gttcattgaataaatgatgtatgtgataatatagactagatacatcatttattgaat 291  Q
    ||||||| ||| ||||||||||||  ||||||| |||| |||||||||| |||||||    
T  20503271 gttcattcaattaatgatgtatgtagtaatataaactacatacatcattaattgaat 20503327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 27895998 - 27895943
Alignment:
Q  235 gttcattgaataaatgatgtatgtga--ta-atatagactagatacatcatttatt 287  Q
    ||||||| ||||||||||||||||||  || |||||||||| ||||||||||||||    
T  27895998 gttcatttaataaatgatgtatgtgacctatatatagactacatacatcatttatt 27895943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Original strand, 2943328 - 2943358
Alignment:
Q  296 ttttgcttataatagtgaccggaaggtgtat 326  Q
    |||||||||||||||||||||||||||||||    
T  2943328 ttttgcttataatagtgaccggaaggtgtat 2943358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 18654274 - 18654244
Alignment:
Q  296 ttttgcttataatagtgaccggaaggtgtat 326  Q
    |||||||||||||||||||||||||||||||    
T  18654274 ttttgcttataatagtgaccggaaggtgtat 18654244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 9992640 - 9992703
Alignment:
Q  235 gttcattgaataaatgatgtatgtgataa----tatagactagatacatcatttattgaataaa 294  Q
    ||||||| |||||||||||||| |||| |    ||||||||| |||||||||||||||||||||    
T  9992640 gttcattcaataaatgatgtatatgatcaatattatagactatatacatcatttattgaataaa 9992703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 38949749 - 38949783
Alignment:
Q  260 ataatatagactagatacatcatttattgaataaa 294  Q
    ||||||||||||| |||||||||||||||||||||    
T  38949749 ataatatagactacatacatcatttattgaataaa 38949783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 2401079 - 2401141
Alignment:
Q  236 ttcattgaataaatgatgtatgtg----ataatatagactagatacatcatttattgaataaa 294  Q
    |||||| |||||||||||||| ||    ||||||||||||| |||||||||||| ||||||||    
T  2401079 ttcattcaataaatgatgtatttggtcaataatatagactaaatacatcatttaatgaataaa 2401141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 14796951 - 14796917
Alignment:
Q  260 ataatatagactagatacatcatttattgaataaa 294  Q
    |||||||||||||||||||||||||||| ||||||    
T  14796951 ataatatagactagatacatcatttattaaataaa 14796917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 26229470 - 26229434
Alignment:
Q  296 ttttgcttataatagtgaccggaaggtgtatcattac 332  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  26229470 ttttgcttataatagtgaccggagggtgtatgattac 26229434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 10872782 - 10872818
Alignment:
Q  290 ataaagttttgcttataatagtgaccggaaggtgtat 326  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  10872782 ataaatttttgcttataatagtgaccggagggtgtat 10872818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 36571476 - 36571414
Alignment:
Q  235 gttcattgaataaatgatgtatgtgata---atatagactagatacatcatttattgaataaa 294  Q
    ||||||| | |||||||||||| ||||    |||||||||| |||||||||||||||||||||    
T  36571476 gttcattcattaaatgatgtatatgatttatatatagactacatacatcatttattgaataaa 36571414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University