View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16481_high_8 (Length: 415)

Name: NF16481_high_8
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16481_high_8
NF16481_high_8
[»] chr7 (2 HSPs)
chr7 (13-400)||(33777020-33777407)
chr7 (13-195)||(33774587-33774768)
[»] chr8 (7 HSPs)
chr8 (13-238)||(10657628-10657853)
chr8 (13-221)||(10707547-10707755)
chr8 (13-236)||(10634053-10634273)
chr8 (12-158)||(10693750-10693896)
chr8 (13-172)||(10690405-10690564)
chr8 (13-174)||(10698338-10698499)
chr8 (144-237)||(10693909-10694002)
[»] chr2 (2 HSPs)
chr2 (10-172)||(15240269-15240431)
chr2 (13-158)||(15246621-15246762)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 33777407 - 33777020
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33777407 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 33777308  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33777307 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttca 33777208  T
Q  213 tgaccttgattaaaactggatcttggtctcataacactagccatg-nnnnnnnctttcttttcagttgagccagaatggtagatgcaacctctctatata 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  33777207 tgaccttgattaaaactggatcttggtctcataacactagccatgttttttttctttcttttcagttgagccagaatggtagatgcaacctctctatata 33777108  T
Q  312 tagtcattggtcaatactcaatagtcatgcactcatactgtgcgtgttgaaacaatatcacttatattattaactttctttgaattttc 400  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33777107 tagtcattggtcaatactc-atagtcatacactcatactgtgcgtgttgaaacaatatcacttatattattaactttctttgaattttc 33777020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 33774768 - 33774587
Alignment:
Q  13 aatatagtagaaa-gctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga 111  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33774768 aatatagtagaaaagctagcaatagtgacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga 33774669  T
Q  112 gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaa 195  Q
    || |  ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  33774668 gtcc--agaaaatgaaggccataaggccatgaaaatgattggtttctactcccatgatgttataaacattaactacactaacaa 33774587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 10657628 - 10657853
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||||||||||||||| | |||||  | |||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10657628 aatatagtagaaagctagctacagagagtagcattgtctttggatgggcttgaaatgcagtgggattatttggataactaatttgaaggaaaccaatgag 10657727  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttca 212  Q
     |||||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||  ||| ||| || ||||| |||    
T  10657728 gacaaagaaaaggaaggtcataaggccatggagaggattggtttctactcccatgatgttataaacattaacaacactggcaacatttatggtcacctca 10657827  T
Q  213 tgaccttgattaaaactggatcttgg 238  Q
    ||||||||||||||| ||||||||||    
T  10657828 tgaccttgattaaaagtggatcttgg 10657853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 10707547 - 10707755
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||||||||||||||||| |||||  | |||||| ||||||||||  ||||||||||||||||||||||||||| ||||||| |||||| ||| |||    
T  10707547 aatatagtagaaagctagcaacagagattatcattgtttttggatggatttgaaatgcagtgggattatctggataagtaatttggaggaaagcaaggag 10707646  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttca 212  Q
    |||||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||| || |||||||||    
T  10707647 tacaaagaaaatgaaggccataaggctatgtagagggttggtttctactcccatgatgttgtaaacattaacaacacttacaacatttatggtcacttca 10707746  T
Q  213 tgaccttga 221  Q
    |||| ||||    
T  10707747 tgactttga 10707755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 10634053 - 10634273
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||| |  || ||||| |||||||| | |||||| ||||||||||||||    
T  10634053 aatatagtaaaaaactagccatagagacaaacattgtctttggatggacttcaaacgaggttggattttctggatatcgaatttggaggaaaccaatgag 10634152  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttca 212  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||| ||| || ||| || |||||||||||| |   | ||||||||||||||||||    
T  10634153 tacaaaaaaaatgaaggccataaggacatgaaaaggattgttttctactcccttggtgtcatgaacattaacaactc---ctatattgattgtcacttca 10634249  T
Q  213 tgaccttgattaaaactggatctt 236  Q
      ||||||||||||||| ||||||    
T  10634250 gaaccttgattaaaacttgatctt 10634273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 10693750 - 10693896
Alignment:
Q  12 gaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga 111  Q
    ||||||| |||||||||||||| |||||  | |||||||||||||||||  ||||||||| |||| |||||||||||||| ||||| |||||||||| ||    
T  10693750 gaatatattagaaagctagcaacagagagtatcattgtctttggatggatttgaaatgcactgggtttatctggataactgatttggaggaaaccaagga 10693849  T
Q  112 gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttct 158  Q
    ||||||||||| ||||||||||||| | ||||| |||||||||||||    
T  10693850 gtacaaagaaagtgaaggccataagacaatgaagaggattggtttct 10693896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 10690405 - 10690564
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||| ||||| |  || ||||| |||||||| |||| ||| |||||||||| |||    
T  10690405 aatatagtagaaagctagcaatagataccaacgttgtctttggatggacttgaaaaggggtaggattttctggatatctaacttggaggaaaccaaggag 10690504  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt 172  Q
    |||||||||||||||||| | |||||||||   |||||| |||||||| |||||||||||    
T  10690505 tacaaagaaaatgaaggctacaaggccatgttgaggattagtttctactcccatgatgtt 10690564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 10698338 - 10698499
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    ||||||| ||||| ||||||||||| || ||| || ||||||||||||  |||||||  || ||||| ||||| || |||||||| |||||||||| |||    
T  10698338 aatataggagaaaactagcaatagacactaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaaccaaggag 10698437  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttat 174  Q
    |||||||||||| ||||| | |||||||||   |||||| ||||| |  |||||||||||||    
T  10698438 tacaaagaaaataaaggctacaaggccatgttgaggattagtttccattcccatgatgttat 10698499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 10693909 - 10694002
Alignment:
Q  144 aaaggattggtttctaca---cccatgatgttataaacattaacaacactcacaatattgattgtcacttcatgaccttgattaaaactggatcttg 237  Q
    |||||||||||||||||    ||||||||||||||||||||||||   ||||||| ||| || ||||||||||||| | |||||||| |||||||||    
T  10693909 aaaggattggtttctactactcccatgatgttataaacattaaca---ctcacaacatttatggtcacttcatgacttcgattaaaattggatcttg 10694002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 15240431 - 15240269
Alignment:
Q  10 aagaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaat 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||  | |||||||||||||||||||  ||||| || ||||| ||    
T  15240431 aagaatatagtagaaagctagcaatagagactaacattgtctttggatggagttgaaagactgtgggattatctggataacagatttggagaaaacctat 15240332  T
Q  110 gagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt 172  Q
     || ||| | ||||||||||||| ||| ||||||| || ||||||| |||  |||||||||||    
T  15240331 aagcacataaaaaatgaaggccacaagaccatgaagagaattggttgctattcccatgatgtt 15240269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 15246762 - 15246621
Alignment:
Q  13 aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |   ||||| |  ||||||||||||||||| |||||| |  |||||||  ||||    
T  15246762 aatatagtagaaagctagcaatagagactaacattgtctttggattg--ttgaaaggttgtgggattatctggatagctaattcg--ggaaacctctgag 15246667  T
Q  113 tacaaagaaaatgaaggccataaggccatgaaaaggattggtttct 158  Q
    |||| | ||||  ||||||| | ||||||||| |||||||||||||    
T  15246666 tacacaaaaaaataaggccacagggccatgaagaggattggtttct 15246621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University